MmuINT0119763 @ mm9
Intron Retention
Gene
ENSMUSG00000030228 | Pik3c2g
Description
phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide [Source:MGI Symbol;Acc:MGI:1203730]
Coordinates
chr6:139578239-139582312:+
Coord C1 exon
chr6:139578239-139578396
Coord A exon
chr6:139578397-139582197
Coord C2 exon
chr6:139582198-139582312
Length
3801 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
TATACACTTTTGTTTTTCAGCTA
3' ss Score
9.17
Exon sequences
Seq C1 exon
GATAAGAGAATCGTACCATGCAAGTGACATTAATTCCAATTCTGGGAAGATCTGGGCCATCACCACAGCCTATCCATCTCGGCTCTTCGCTGACACCAAATTCAGAGTAAAAATTTCTATTGATAACTCAGCCCAACTCCTCCTTCTTATGCCACACG
Seq A exon
GTAAGAAAATGTGCCACAGATCTCGGTGTTCATGGATAGCCTTGAACTCACTAAAAGAACCACCATTCGGCACTGTTTTGCCCTGAAGGAAAGTCAGAGGAAAACAGCCATGAGCTATTAATTGTGGACATCTAAGGGGGAAACATGATCTTCCTTCACAGAGCTCTCCAGAAAAGTCTTTGTTTTCATATTGTGAATAATAGCAGGTGGAATGGGTTGTCTGTGGAATTAAATCAATTTCTAAAATATTCAGGATAAATATGATGAAAGAAAACACTGTTTCCTACCCAGCTGGAACAGGTACTTTGTTCAGGTGTGTGAATAAATCTTGGAAAAGAAAGAGGAGGTCTGTTCCCACCATGAGGAATGTAAAAGCCCCGTACAACCCACACTATCTTAATTATCAGTGCCGTTGACTGACAATGAGTCCTAGGGTCCTAGAAATGTGTACTATGTAATATTTCCTAGACATTTTCTTCACTATCACTGGAAGATACCTTTAAACTTACATAATGTCCTGTATTTGTGCGTATGGTCCTTTACTTTAGAAAGCAATGGTCATTTGTTAAATGTCCAGCTGCAATGGCATAGATTATTACTTAACAAGAGGAAAACATTTCCAGAGGCACAATGGCCTGGGAAATGTTTTCACCTAGTTAATATTTGTAATTATTCCTTTTTCTATTTTGCTCTAGATGAGGCTTTACGTAAATACAGTTAATGACAGACAGACATGGTGTGTTGATATTTCTGTTAAAACCATATGGTTTGGAAACACCTGTTGGCTAAAGCAAGAGAGAAAATATTTTTAAACAATGCTCGCATTCCTTATAGAGTTTAAGAGTAGGAAAGCATCAAAGATGTAGGGATGGATTTATAACACAAATGTTGAAGCTCGCTGTTTCATTATAGCCCTGAGCTGGTCTCTCTCTGGCAGTTATCACTGCCTTGTTCTCTGCTGATTCACTGTCTTGTTTTTCCAAAGCAATAAAGAAATAAAAGCTAAGTTCTCAAGCATACATGCTGTTTGTCCATCAGTGAACAGTCAGCCCATCTCTTATTAGATCCAGCTCCCAATATTTAATAGCAGAATTGTGATTCTCCAGCCAAGGGTCTTGCATTTTGATCTCACCAGCACATTGTCAGATTCCAGTTGCTGAAGTTGCTGGAGAATTAGGAGTCAAAGAATGAGGAGAGTGATACAAAGTAAGAGATGACACAAAATGGATAGAATGATCCTATCACAGGCTAAAACAAAAATTCAGGTATAAAAATCTACATAAAGGAAACCCCGGTATGTGTGTCGACAACATACACTTGAGGAGCTTCATTTGATGATTTTAAGAGTCTAGGATAAAGATGGTGGCTTCAGGTGCAGACCTATAAGGCACCGGTGGCTGGAGCGGTTATTTCACAGAAGCTCGCTCGGCAGACAATTCTCCAAAGCTCCACATTCTGGTGTGCTGTGTGCTTGCAGCTGGAGGAATGCAGAGTCTCAGGTCCAAACCACCCTTGGGACTTTCCTCTACCCTCTTTCTCTCCTGCACTCTCCCCCAACCCCCCAACCATAGAAACTAGGTTTGCTCATCCCAAAGCTCGCTATGGAGTGGGCTATGGAGTCTTGCGTGCACATTAAGAGGATATCCATATCTAAGTAACAATCTGTCATGTTCCAAATAGGACAGCACTTGCAGCCCTGGCAACAGAAAAGCAAAATCCAGGCTGTTAGCATTCTAAGCTCCACCCACACGGCTACCTGGCAACTGCCAGGTATGCTCCGCCCCACAGTTACCTGGCAACAGCCAGGTATGTCCTACTCACTATAAAAGGGGCTGCTTGCCCCCTCCTTGCTCTCTTGCTCTTTCTCTGCTTCCCTTCCCCCATCTCTCTGCATTCCACCCCCCTACTTGTTCATAGCCTGCCTCTCCTCCTCTACTTTTCTCTTCTCCCCTCTCCCCTCCCCTCCCCTCTCCCCTCCCCTCCCCTCTCCCCTCTCCCCTCCCCTCCCCTCCCCTCTCCCCTCCCCTCTCCCTTCCTCTCCCCTCCCCTCCCCTGTCCCCTCCCCTCTCCCCTCCCCTCCCCTTCCCTCCCCTCTCCCCTCCTCTCTCTTTCCCCTCTCTCAGCCTTTCTTTGCCTCTACTACCCTCTCTCCAGGGAAAGGATGCCTTTGCATGGGCCAGCTGAGCCACCCCCTTCCCCCATACCTGACTACACCTCCATAGAACATATCCTCCCCCCGCCCCCCCTTTATCTTTTTATAAACACAACACAAGTGTCTAGCCACCTTCTACCACCAGCTTTCTCTGCTGTTTTCCAGAGTACCTTGCCAGGGATTTTGCCCTCGGTCTTCATTCTTTCAGCATCCCCAAGCTGTGGTATGATGAGATACCTTTGTGACAGGGCAGTGCATGACCATCCGGCATTCCCTTAAGAATGCTACTATTTAGTTTTCAAACCCATCCCTTAATGACATCTTGACCTACCATACATTTTAAATTTGTGTCTCCTTTTTGGTCATAGCGATGCCATTTATGCCACTCTATGTTACCAAGTTTCGGACAAAGTCACTTATATACAAAAGGAAGTAGAAGAAGAAAAAAATCTGACTGTAAAATAAACCAATTAAGCAGACACAGAATTACAGATAAAACTCCATTGGACAATGCAGTTGGCCATTTGAAACTTTCTACTCAAAGCCCTTACAGGCTGAGTGTCTTCAAGAGTCAACTCTATTTGCTTTCAGTGATCAAATTCATCGGCTCACACTAAAACTGTGGGCATGACACGTTTGACTAAATCAGCCACATTAGTTTGTTTTATGCATGTTAACCACATGTCAGGCTCCTAAAGGGCAGAAACTATGGCAATCTAAATTCTTTAATAAAGAAACTGAGCCCCGGAGATTAAAGAACTTGTCATCATAAATTCACTAAAAATGATGAAGTCTGACTTATATCTAGGGATTAGCATAAAGCACTGAGAACCACATGTTTGTGGTGGTAAACTTATCTTAATATCAAGACAATAAGATATATTTTTAAAATATTGTTTTTTTATTTAATTTGTTCTATATTTATTTGTGTGATTCCAAGTGTATGCACTGCATCTTATATATGCAGTGCCTGCTGAGGCCAGAAGGAGCCACCATGGCCCCCTGGAACTAAGGTTACGTTTGCCTATGACGCTCCAGAGAGGGCTAATGAGAACCAAACTCAGGTTCCCTGTTAGACTAGAAAGTGGTCTCTGCCACTGAGCTACCTCTCCAATGCAATCATATCTCTTTTTAGTTATTTTATTTTATTTTATTGATGGGTGTTTTGCCTGCACACATGTCTATGTGCATATCCGTGATGCCCATGGAAGAGAACTCAATCCTGAATCTCCTAGAACTGGAGTTACAAACAGCACTGAACTGTCCTGTGAGCGCTACAAATTGACTGCAGGTCCTCTGGAAGAGCAGGCAGGATATTTGACTGCAGAGCCATCTCCCCAGCATCCCAAGGCTATATTTTGTGTAGAGCCACAAAATAAATCCAATGGTTATGAGAAACGCAACGCCCAGATTTGAATTTTTTCATTCACACAGAACTGAACTTGAAAATGATCACAAGCAGCCTTTATCTAACATAGCCATGAATGTAATAAGTAGACAAACAAATGCGCTGAGCTTTCATTCCCCTTGATGGGGCTAGCTGGCTACAATACTTCATAATGTGATTATCAGGTTTTGTGCTCAGAAGCTTCGCTGGATATTTCATGAGCTCTTTCTCACTCGTATTATTATACACTTTTGTTTTTCAG
Seq C2 exon
CTAATTATCTTGTCAAAGACCTAATTGCTGAAATTCTACTTTTATGTGCAAATGAGCCGCTTTCCCCCAAAGAGTATCTTCTAAGTGTATGCGGTTCTGAGGAATTTTTACAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030228-Pik3c2g:NM_207683:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PU(32.3=57.4)
A:
NA
C2:
PF0079413=PI3K_rbd=FE(39.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: