GgaINT0110824 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:165971560-165973620:-
Coord C1 exon
chr1:165973429-165973620
Coord A exon
chr1:165971846-165973428
Coord C2 exon
chr1:165971560-165971845
Length
1583 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TGAATTTCTCTTTGTTATAGGTA
3' ss Score
10.51
Exon sequences
Seq C1 exon
ACTTATAAAGAACACTTAGAAGGCCAGAAACACAAAAAGAAAGAAACAGCATTAAAAGCTTCCCAGAACACCAATAACGGCAGCACTTCTGCTCGTGGAACTCAGAATCAGTTGCGCTGTGAGCTTTGTGATGTGTCTTGTACAGGAGCAGATGCATATGCTGCCCATATCCGAGGAGCCAAGCATCAGAAA
Seq A exon
GTAAGAGCTTTTTTCCTGTTTTTATTACACAACTCAGTTGTACTTTTTTTCCCCTCATCTTAGAGGGGAGAAAATGAGCAGAAACAATATAATTTGATTAATTTTGTTTAACAGTGTTCAGCTTTTTGTTTGAAATGTATAATTAAACTCACTATTAGATTGGGCATTTCGAGGAGAAAGGAGAAAAATACTGGAGAAGAGAAGGCTCCAGTAGAAGGCACCTTATAGCGGCCCTCCAGTACCTGAAGGGGGCCTACAGAAAAGCTGGGGAGGGACTTTTTAGAAGGGCAGGTAGTGACAGGACAAGGGGAAAAGGTTTTAAACTTGAAGAGGGTAGATTTAGACTAGATATTAGGAAGAAATTCTTTACTGTGAGGGTGGTGAGACACTAGAACAGGTTGCCCAGAGAGGTGGTGAATGCCCTCTCCCTGGAAGCATTCAAGGCCAGGCTGGATGGGACTGTGAATAACTTGGTCTAAAGGGAGGGAGGCATCCCTACCTATAGTAGGGGGGTTGGAACTAGATAATCTTAAAGGTCCCTTCCAACTCAAACCATTCTATGATTCTATGATTAAGAGCAAATGTTATAATTTAGATAGACATGTATAGTGTTCTTTCTTTCATAAATACTTTAAATTATTAAAGTTTTGGGTTGTGTACAGTAATTGCATAGGTATATGTCATGTGGTATATATTGTCCTCATACATTTGGATGTAGCTTTCTCTTCCCTATAGATAGAGAGGCACTAAAAACTAAGAAGTGTATGTATACTGTTGTACACACATTATCATTGTCTAAACATGTTTGCATTAAAGGTGTGTCTAGCTGACTTTTTTTTGCTACTTTGAAATCTTTCCCAATCTTTAGTTTTCATTTTGTATGTTTGGTTTTTTGAACCACTTGCATTTCTTTCTCAGGTGATGGTCAGATGTCACCAAATGTAGTGCTATTTTATCCTTAAGCATTACTTTCAAGAATAAGCATGTATCTCTTTGTTTTCTATGAATTCTAAAGAGCACTGAGTTATACCTCTCACATCCTCCTTAATCATCTCTACAGATGTGCTTTTTTAAAAAAGAGAGAAAAACAACATTTATCTAAGGAATCTCATCAGTTTTGCTATGTAATTTGGCAGTTCTTTCAGTACAAATATTCTTAAAAGGTAGTGATCAAAAGAGACAGTGTTGTTGAATTTGAATTAAATAACTTTTATTTACAAGTAGTATTTGGCACCAAAACAGTTTAACATACTACTCTTTTTGAAGAGAAGAAAAAGCAACCAGGCAACAAAGCAGTAACACTGAAACAGTTTGAGCAAAATACATCCTTCTGTTTTATTGGCTTGTTAGTTTATTGACTTTCTGTTCTCATCCACGTAGCTTTTGGAGTATATGTCTGAATTTGTAATGGAAATAAACAGTCTGAGATGACAATAAAGAATTTCCTTGTTACAGGTGACAAAAATTTTTACATCCATCTTTTTTTTGCTAAGATCACTTCTTAAGAAGTAGTAATTATTTAGTTATATTGTTGTGGTGTTTTGTTGTCCCAGGGAGATTATATGAATTTCTCTTTGTTATAG
Seq C2 exon
GTAGTAAAATTGCACACAAAACTTGGCAAACCTATTCCTTCAACTGAACCAAATGTGGTTACCCAGGCTACTTCCTCAGCATCCACATCTGCTTCCAAACCAGCTGCCTCTGCTTCAAATGTGGCAACTAGCAGCAGTACTGTGAACTCTGTTGCATCCTCTGCAGTGAAAATTCTTACTCCTGTGGGAAACACACTACTTAACATGGCATCCAACAACAAAACATCTTCAATCACTGCTAATATAGCTGTAAAGAAAATATCTACACCAAAAATAAACTTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014545:ENSGALT00000023466:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=NA C2=0.562
Domain overlap (PFAM):
C1:
PF128742=zf-met=PD(40.0=15.6),PF128742=zf-met=WD(100=39.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAACACCAATAACGGCA
R:
TGTTTTGTTGTTGGATGCCATGT
Band lengths:
356-1939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]