GgaINT0111602 @ galGal4
Intron Retention
Gene
ENSGALG00000017106 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr1:176181987-176185418:+
Coord C1 exon
chr1:176181987-176182065
Coord A exon
chr1:176182066-176185356
Coord C2 exon
chr1:176185357-176185418
Length
3291 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACG
5' ss Score
6.05
3' ss Seq
TGACAATTTTTCTTTTTCAGATG
3' ss Score
11.89
Exon sequences
Seq C1 exon
GTTTTCTGGGGTCACTGCATCAATGCCCTGATCCATTCCATCATTCTCTTCTGGTTTCCACTGAAAGTACTGGAGCATG
Seq A exon
GTAACGGCTTCATTATTTCTTATGTCAGTAACTGATGTTCAGTCCTACAGAGCCAACGTGTTTGCAGAGTTGGAGGTCGTGACAAGTTCTAAGAAAATAATGCTGACAGTTCAATAGACTCGAGCTGCTGTTCTTGGCCAGTTATCTGGTGGCTTCCTGAGTTTATTCCTATTTAACTTAATTATTGTTCATGTAATGACTTTAATACTTAAGAAATTAAACTACTGTTTTGCCAAAGTCTTACTCAAACACTAACAACGTTCTGTACAACACCTGATTTTTTTTCAGTGATGTGTTTAGATCTCAACTTTTTACTGTATAATGTTTTTGCAATGGTTGTTAAAGCAGCTGGTAGCTGTATTACAAGCATTTGTTTTATCTTTCTGGATCTTTCCCATTCCATAATGCAGTACTGTAAAATATAGAGTGAAAGAATGAGGTTTCACTGTCACCAAAGTCTGTGGAAGAAGTGAATTGCCTGGATTGGAAAAGATCAGATTGTGAGTCAGATATTAGGAAAACAAGACTTTTTTTGTATGAACCAAGTTTACTAAGACTTGCTTTCTATGAAATGTAGTGCAACTGCACAGTATTCCAGGGAACAGTAAATCCCATGCAGTTCCTACTTAGATTTATGATATAATTGTGTGGGCAGAGAAAATGTGGGAAATTTGTTTTTCTGTATTAAGAAATGGGATGAGATCAGATGAGGAATCTGGGCGAAAGGGGGGCAGTATTTATCAAAAAACATGAGTTTTTCAAAACAAACACTTATCTAGAATCACTAATTCCAAGATCCTTCAGCTTGAGGATGGATTAATTGGAGAGGAGGTAAAAGAAAAGGAAAAGCAAGGGAAGATGAATGCTCACATCAAAGTGGCATGATAGTGGAGATATGGAGGAGGCAGGTTCGTGTTTCTCTTTACCTGGTTCAGTAAAACTTCAGTGTCATATCCTCAGTGACAACTTCACACAGTGTGTGACAGACCATACAAGAAGGAAACCTCCCTTTCCTCTGAGGGCTGAGAGCTCTGTCTCAGTTTACGGGGAGAGAGGTTGTTTTTGTTTCATTGGTCTTTGTTTTGCTTTGGGGGGTCTGGGGTTGTTCTGTTTCACCACTTTTATGGGAAATGTTAATCTTGAATAGCTCCTCTTTAAATCTAACTTGAGCTATTCTGGGCTGATGTCTATAGTAGTTGCAGGCTGTGCTTTCTGTTTCAGTCTTCCATAAATAGTTTTTTGACTATTCAGTTCCTAAGTAGGTAATACACTTTTGCTTTAAATAGCTGAAATGGTAAGACTAAAATAGTCACCTGCTCACATGGAAACTTTCTTTCTGAGATAATTTCAATAGCTTGCTTAGCTTGCTTTCCAAAGAGGAACAAATATTGAATTTTCAAGTTTCTCTCTATTTCTAAGTAAAAGAAAAGAGATGCCAGTGCCGTAGACAAAAATGCACCATTCTCACTGGGATGTTTTTTAACCTCTCGAGTTCCTTAGAATCTGAAGTGCACGTGTTCAGTGAATGGACACTTGTATGGCTTTAGAAATATGTGTGTTCACTGAACATCTGTCTGTTCTCGTTAACAGAAATATCATTCCTTTCAGGACTGCTTAGCCTCCTGAAGTGGAAGGTCATGGAAAACTCTGGAAAAAACAATTCATTACATTGTCACATTACAATGTAACTTTAAAAAAAGATTGAGACTTGCAGCAAATTTTACTCCATTACTTAAATGTGCACTGTGGTGTGCTAAAGCAATATACCGTCAGAGTCATTAGATGAGTTTATTATAGAGCTATCAAAACAGGTAAGTTTTTAGGCATGCCTCTTTGTCAATAAACTGAGATGTGGGGCATCACCAGGATTTATGGGATATGGAAGGCTCCATTCTCTCGTGCTCTTTGCCTTTTTTGTTGACGGTAGGGGAAAGAGCAAAGAGACTGCTACAACTTTGTGTATGGTAAATTTCTGAGGCCACGGAGTACCGGCGGAAAAAAATGGGCTGATAGAGATGCGTGTGGCTGAAGATCGAGCCTATTGCTGGGCAAACTGGATCAGGTTTTTGATCTTGTTCTGCTGTTTGTGATTAGTATATCTGGTGCTGTTTCATAGCAGTTTGGGTTTAAAATGGAAAGAAGAGCTTCAGTATAGAATCAGTGACTTCTGGAAGATATTCAGAATCTGTCAGTTGAGAGAAAAACACATGCAGTGGTTGTAGGAGCAAACCCTCATGAGTAGCTTGGGCAGCTGCACTGTCTGAACCTTTTATCCACGTGATGGACAGAGTCTTCACCAGAGGTCAGGCTGTCACGGGCTCTTCTCTGTGGACTTCAAGATTTGCTGATTCTGGAGATGTACTTTACAGGAACACAGTTAACTAAGTAGGTGACCCCGGTTTTACAGTGTCAGATCCAGTTTTGCAAATAAACCTAGCTAAGTGGTACCCTCATAGTAGGAGCACTGTGCTAGGCAGTATGTGTTTAGGAACAAGTCCAAGGGTTTTATCTTAAGCCTTTTTCATCCCTGCTGTTTGTGTATTTCTTTAGCAGTTGTCTTAAAACCTGTGAAAATACCAGTACTTATCATGCTTGAGTAATGCTTGAAAGTTCCTGTGAGTATGAGTTCATCTGGCATTAGCGTAGCTGTTGAGTGTGCTTTCGTGGTGTTCCGGTTTTATTCAGCATGGGCTAAGAAAGACTAAACAGACATTTGAAGCATTGCCAAGGTTGGCACTTGCAAGTGATAGATTAACATGTACTTACCCTTCTGTGCACTTGTCTAAGAGAAAGCGTGTGGAGGGACTGAGTGCAGCTCAGTTACTGAATTAACCTCCAGTGAGGTATTTTAGATATTAAATGTGCTCTTAACAGAAAACTGCAAAAGATCAATCTGTATACGCAACTTTATTTCAGCACAGATCAAGTCATGTATAGGCTTTATTCACGATGGAATTTGTTAGAGCTGTCCATAAGCAGCACAGAACAGATAGTCACAGAAGTGATGCCGACCTACCTCAGCTCTTAGAGACGAATTATGCATTAGTGCCTGGCAAAAGTTCCCCTTCTGCTGACAGCTTCTGGCAAGCAGGGCTGTGTGTACACACTCTATCTGAGCATCCTGTCTTGTTTAGCACAACTGGTGCTAAACACAGCCTCTAAAAGTGCTTTTTGACATTCCAAAAGACAAGTTTGGAACCAGTTACTGTCTAGCCTCCTCGACATCTCCTTGATGCTGCTTCTGTTCTGTTGATAAACTGGTTAACAAATGTGACAATTTTTCTTTTTCAG
Seq C2 exon
ATGCAGTATTCACAAATGGGCAGGGAATCGACTATTTATTTGTTGGGAACATAGTTTACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106:ENSGALT00000027641:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF038578=Colicin_im=FE(22.6=100)
A:
NA
C2:
PF038578=Colicin_im=FE(17.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]