GgaINT0115192 @ galGal3
Intron Retention
Gene
ENSGALG00000015850 | SFRS15
Description
NA
Coordinates
chr1:108129599-108129966:-
Coord C1 exon
chr1:108129804-108129966
Coord A exon
chr1:108129680-108129803
Coord C2 exon
chr1:108129599-108129679
Length
124 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
AACGCGTATGTTTCTTATAGGCT
3' ss Score
7.51
Exon sequences
Seq C1 exon
GTTCCACCACATCCATCAGGTCCTCCTGTGGTTGGTGCACTCCAGCCACCTGCTTTCACGGCGCCTTTAGGAATTCCACCTCCTGGATTTGCTCCTGGAGTGCCACCACCACCACCACCTCCATTTTTACGACCTGGCTTCAACCCAATGCATTTGCCTCCAG
Seq A exon
GTATATTCAAAGGGATATTAAGTATTTATTTTAACCATGTACCAAATAATAGTATTTGCCATATAAACAGCACGGCTACATGTTGGTAAATGATGTGTAGTGTTAACGCGTATGTTTCTTATAG
Seq C2 exon
GCTTTCTTCCTCCTGGACCACCCCCACCTATAACTCCTCCAGTATCTGTTCCTCACACTCCAGCAGTAAACATCCCAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015850:ENSGALT00000025555:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCACATCCATCAGGTCC
R:
AGTTTGGGATGTTTACTGCTGGA
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]