HsaINT0148707 @ hg38
Intron Retention
Gene
ENSG00000156304 | SCAF4
Description
SR-related CTD associated factor 4 [Source:HGNC Symbol;Acc:HGNC:19304]
Coordinates
chr21:31685398-31685733:-
Coord C1 exon
chr21:31685568-31685733
Coord A exon
chr21:31685485-31685567
Coord C2 exon
chr21:31685398-31685484
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
CATTATTTTTCTTATTCTAGGTT
3' ss Score
10.13
Exon sequences
Seq C1 exon
GTCCCACCACATCAACCGGGTCCACCTGTAGTTGGTGCTCTCCAGCCGCCTGCTTTCACGCCTCCTCTGGGAATACCGCCTCCAGGCTTTGGTCCTGGTGTTCCTCCTCCCCCTCCTCCTCCACCATTTTTGCGCCCAGGATTCAACCCAATGCATTTACCACCAG
Seq A exon
GTACACTAAATTGTCTGTGAACATACTTTAGAGCCTGCGATGGAGTGATACAGCATAAGTTGACATTATTTTTCTTATTCTAG
Seq C2 exon
GTTTTCTGCCTCCTGGACCCCCACCTCCTATAACTCCACCAGTATCCATTCCTCCTCCTCACACTCCACCAATAAGCATCCCAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156304:ENST00000286835:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF139001=GVQW=PD(7.7=27.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGCCTCCTCTGGGAATAC
R:
TTGGTGGAGTGTGAGGAGGAG
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains