GgaINT0117952 @ galGal3
Intron Retention
Gene
ENSGALG00000011894 | F1NJG4_CHICK
Description
NA
Coordinates
chr1:51297474-51298409:+
Coord C1 exon
chr1:51297474-51297615
Coord A exon
chr1:51297616-51298221
Coord C2 exon
chr1:51298222-51298409
Length
606 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CTAAGCTGTGCTGCTTCTAGGTA
3' ss Score
7.54
Exon sequences
Seq C1 exon
GGTAAGGAGGCTGAAGAGAATGGTTTCAATAAAAGCAACCTTACTCTGGTGACCGCAGACTTACTTGTAGCTGGTTCTGAGACCACCGCCACCACCCTCCGATGGGCGTTCCTGTTCATGCTTTTGTACCCAGAAATACAAA
Seq A exon
GTAAGTGAGAGGACAAGTACAGGTGTGGTATGCTCCTCTGAACACTCATTTCATGGCAAGGACACTGCACATCTCTCCGTATTTTGGGCTTTCTGCAATAAGAAACAGCTTTGGGAATTGTTGGTCTGGGAGAAACCAGGTGAAACGCTTCCCCAAACACAGCTGTTCTGGCACAGCTTAGTAAGAGCTGTGGGGAATCTGATGAAAAGACTGGAGTTGGAAGGCCATGTTCAGGTTCCCACGCAATGAAGGCTGCTGGGGGACTTTCAGTGGCCATGGTGCCCTCCTTCCTGTATTTGGAACACACCCTAAACTGTTTTAATTCTCAAATGCTACATGCACAAGTACACTTTCAGTCACATTGAGGAGGGGTAAGGCAGCATGTCAAATGAATTTTATTAAAGGCGCTGTGCACAGCCAAAATTATAGAGATCCTTCTGAGCAACTGAAAAAGTGTATTCCCATAGTTTCTGCCCCTTTCTATAATTGCTTGTCTTGCTCTTGCCCAGTGCCTGCTGAGCTCATGCTGACAGCTTTCCCATACCTTGTATCAGCCCCTTCTGATTATCTACGGAAGCTCTAATTCCTAAGCTGTGCTGCTTCTAG
Seq C2 exon
GTAAAGTCCACAAAGAGATTGATAAGGTGATTGGAAGAAACCGACCGCCCACCATGGCAGACCAAGTGAACATGCCCTACACCAATGCCGTCATCCATGAAGTACAACGCTTTGGGGACGTTGTTCCTATGGGACTACCTCACATGACATACCGGGACACTGAGCTTCAAGGTTTCTTCATTCCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011894:ENSGALT00000019412:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAAGGAGGCTGAAGAGAATGG
R:
TGGGAATGAAGAAACCTTGAAGCT
Band lengths:
328-934
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]