MmuINT0044994 @ mm9
Intron Retention
Gene
ENSMUSG00000062185 | Cyp2d34
Description
cytochrome P450, family 2, subfamily d, polypeptide 34 [Source:MGI Symbol;Acc:MGI:2385022]
Coordinates
chr15:82447178-82447703:-
Coord C1 exon
chr15:82447562-82447703
Coord A exon
chr15:82447366-82447561
Coord C2 exon
chr15:82447178-82447365
Length
196 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGC
5' ss Score
4.09
3' ss Seq
AAGGGATGCTGTCACGCTAGGTA
3' ss Score
2.33
Exon sequences
Seq C1 exon
GCCAAGGGGAATCCTGAGAGCAGCTTCAATGATGAGAACCTGTGCATGGTGGTGAGTGATCTCTTCACTGCAGGGATGGTGACCACCTCAACCACACTGTCCTGTGCCCTGCTGCTCATGATCCTGCATCCGGATGTGCAGC
Seq A exon
GTGAGCCTGGCTGGGGCTGGGAGGGAGGTAGAGGCACAATCCCCAGTGAATTGAGATGCTTGTGGCTCCCAGTGCTAACTCAACCCAGACTCCAGTGCGGCTCACTGGTGTTTCTCACATCACCTCAGCCCTTACCATGGTTGTAAGACAGGGAAGTCCCTATGACTGTTTCACTAAAGGGATGCTGTCACGCTAG
Seq C2 exon
GTAGAGTTCAACAGGAAATCGATGCAGTCATAGGGCAGGTGCGGTGTCCAGAGATGGCAGACCAGGCCCGCATGCCCTACACCAATGCTGTCATTCATGAGGTGCAACGCTTTGGGGACATTATTCCATTGAATATACCACGCATCACAAGTCGTGACATTGAAGTCCAGGATTTTCTGATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062185-Cyp2d34:NM_145474:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
NA
C2:
PF0006717=p450=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATCCTGAGAGCAGCTTC
R:
AGCGTTGCACCTCATGAATGA
Band lengths:
247-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: