GgaINT0117952 @ galGal4
Intron Retention
Gene
ENSGALG00000011894 | CYP2D6
Description
cytochrome P450 2D3-like [Source:RefSeq peptide;Acc:NP_001182486]
Coordinates
chr1:49270458-49271393:+
Coord C1 exon
chr1:49270458-49270599
Coord A exon
chr1:49270600-49271205
Coord C2 exon
chr1:49271206-49271393
Length
606 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CTAAGCTGTGCTGCTTCTAGGTA
3' ss Score
7.54
Exon sequences
Seq C1 exon
GGTAAGGAGGCTGAAGAGAATGGTTTCAATAAAAGCAACCTTACTCTGGTGACCGCAGACTTACTTGTAGCTGGTTCTGAGACCACCGCCACCACCCTCCGATGGGCGTTCCTGTTCATGCTTTTGTACCCAGAAATACAAA
Seq A exon
GTAAGTGAGAGGACAAGTACAGGTGTGGTATGCTCCTCTGAACACTCATTTCATGGCAAGGACACTGCACATCTCTCCGTATTTTGGGCTTTCTGCAATAAGAAACAGCTTTGGGAATTGTTGGTCTGGGAGAAACCAGGTGAAACGCTTCCCCAAACACAGCTGTTCTGGCACAGCTTAGTAAGAGCTGTGGGGAATCTGATGAAAAGACTGGAGTTGGAAGGCCATGTTCAGGTTCCCACGCAATGAAGGCTGCTGGGGGACTTTCAGTGGCCATGGTGCCCTCCTTCCTGTATTTGGAACACACCCTAAACTGTTTTAATTCTCAAATGCTACATGCACAAGTACACTTTCAGTCACATTGAGGAGGGGTAAGGCAGCATGTCAAATGAATTTTATTAAAGGCGCTGTGCACAGCCAAAATTATAGAGATCCTTCTGAGCAACTGAAAAAGTGTATTCCCATAGTTTCTGCCCCTTTCTATAATTGCTTGTCTTGCTCTTGCCCAGTGCCTGCTGAGCTCATGCTGACAGCTTTCCCATACCTTGTATCAGCCCCTTCTGATTATCTACGGAAGCTCTAATTCCTAAGCTGTGCTGCTTCTAG
Seq C2 exon
GTAAAGTCCACAAAGAGATTGATAAGGTGATTGGAAGAAACCGACCGCCCACCATGGCAGACCAAGTGAACATGCCCTACACCAATGCCGTCATCCATGAAGTACAACGCTTTGGGGACGTTGTTCCTATGGGACTACCTCACATGACATACCGGGACACTGAGCTTCAAGGTTTCTTCATTCCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011894:ENSGALT00000019412:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAAGGAGGCTGAAGAGAATGG
R:
TGGGAATGAAGAAACCTTGAAGCT
Band lengths:
328-934
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]