GgaINT0119175 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90813579-90814571:-
Coord C1 exon
chr1:90814544-90814571
Coord A exon
chr1:90813691-90814543
Coord C2 exon
chr1:90813579-90813690
Length
853 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
TCTCTTCCTTCTTCCCATAGTGG
3' ss Score
10.62
Exon sequences
Seq C1 exon
ATCGGGAAAATCAGTCAATGCTGATCAC
Seq A exon
GTAAGTGCTTCTCTTTTGACTGATTTGAGACTCTATCACTGGGGGAAAAAAAAGAAAAAAAACCTTCAAAGAAAAAAAAATCCCCTCAAATGCTGGTTGACCTTTGAAAGCTTAGCTAAATTGCCTGGAACTTAATCCAAGTCAGTAATTAGCACTTTGGCCATCTGATGTCTGCTTTGAGTCTCGCTGGAAAGGAGTAGCTGAGGATTTCATGATGGAGGCCAGCCTGTTTCTGATCTCCATTTAGTGTTGGTTCCAAGTGGGCGCGATAACAGCTCCGCAGGGAGTTAAAGAGGTTCTTCCAGGGTTGTCCTTCCTGTCTGCCCTCTTCAGGCTCCAAAGAATCCTCCTCAACACAGTTGTTCTTGCTGCAAAACATAGCTAAGGACACTGAGTTGACACATATGTAGGGAAGAAGATGACCAAGACAGAAAAGAAGCACTTTTTTTACTGGCAAACATGAAAGATGGAGAGCTGCGTGTCTCTCTCCACAGTTCACATATGATTCTGGATGATGCTGGCAAAGTGCTGCGGATTTCCTTTGGTTTTCAACTCAATAGCTGTACAGAGATATGCCTCAGATACTGAGTGTGCATGTTTGTAACAGAATTTCATGCCCTTAATGGAATCTCAAAGAAGCGTGGGTTTGTGTGAGATTTCTGAATGCAGTCTTATGAAGCATTATTTGCCACTGACGTGATTTTCGCCAAAATGACTAAACAGACTACAAAAATCAGTTGGTGCCTCTAAGAAAAGCCTGTGCGGAGCACAGAGCTGATGGGATGATGGGTGGGTGAGAGCACAAGTTACCACTGGTGGAGCAACAGTAATGTTCTCTTCCTTCTTCCCATAG
Seq C2 exon
TGGAGAATCCGGTGCTGGCAAGACTGTCAACACAAAAAGGGTCATCCAGTACTTTGCCACAGTGGCAGCCCTGGGTGAACCTGGTAAAAAGAGTGTAAGTCTGCCAGCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.129
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]