GgaINT0119175 @ galGal4
Intron Retention
Gene
ENSGALG00000015358 | myosin
Description
myosin heavy chain, cardiac muscle isoform [Source:RefSeq peptide;Acc:NP_990097]
Coordinates
chr1:86917110-86918084:-
Coord C1 exon
chr1:86918057-86918084
Coord A exon
chr1:86917204-86918056
Coord C2 exon
chr1:86917110-86917203
Length
853 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
TCTCTTCCTTCTTCCCATAGTGG
3' ss Score
10.62
Exon sequences
Seq C1 exon
ATCGGGAAAATCAGTCAATGCTGATCAC
Seq A exon
GTAAGTGCTTCTCTTTTGACTGATTTGAGACTCTATCACTGGGGGAAAAAAAAGAAAAAAAACCTTCAAAGAAAAAAAAATCCCCTCAAATGCTGGTTGACCTTTGAAAGCTTAGCTAAATTGCCTGGAACTTAATCCAAGTCAGTAATTAGCACTTTGGCCATCTGATGTCTGCTTTGAGTCTCGCTGGAAAGGAGTAGCTGAGGATTTCATGATGGAGGCCAGCCTGTTTCTGATCTCCATTTAGTGTTGGTTCCAAGTGGGCGCGATAACAGCTCCGCAGGGAGTTAAAGAGGTTCTTCCAGGGTTGTCCTTCCTGTCTGCCCTCTTCAGGCTCCAAAGAATCCTCCTCAACACAGTTGTTCTTGCTGCAAAACATAGCTAAGGACACTGAGTTGACACATATGTAGGGAAGAAGATGACCAAGACAGAAAAGAAGCACTTTTTTTACTGGCAAACATGAAAGATGGAGAGCTGCGTGTCTCTCTCCACAGTTCACATATGATTCTGGATGATGCTGGCAAAGTGCTGCGGATTTCCTTTGGTTTTCAACTCAATAGCTGTACAGAGATATGCCTCAGATACTGAGTGTGCATGTTTGTAACAGAATTTCATGCCCTTAATGGAATCTCAAAGAAGCGTGGGTTTGTGTGAGATTTCTGAATGCAGTCTTATGAAGCATTATTTGCCACTGACGTGATTTTCGCCAAAATGACTAAACAGACTACAAAAATCAGTTGGTGCCTCTAAGAAAAGCCTGTGCGGAGCACAGAGCTGATGGGATGATGGGTGGGTGAGAGCACAAGTTACCACTGGTGGAGCAACAGTAATGTTCTCTTCCTTCTTCCCATAG
Seq C2 exon
TGGAGAATCCGGTGCTGGCAAGACTGTCAACACAAAAAGGGTCATCCAGTACTTTGCCACAGTGGCAGCCCTGGGTGAACCTGGTAAAAAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.219
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]