MmuINT0103407 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr16:49070276-49071246:+
Coord C1 exon
chr16:49070276-49070303
Coord A exon
chr16:49070304-49071152
Coord C2 exon
chr16:49071153-49071246
Length
849 bp
Sequences
Splice sites
5' ss Seq
CACGTATGT
5' ss Score
7.26
3' ss Seq
TTTTCAACTTCAAACCACAGAGG
3' ss Score
5.3
Exon sequences
Seq C1 exon
ATGGAGAGAACCAGTCTATAGTCTTCAC
Seq A exon
GTATGTGTTTGTTTCATTTTTCTTTTTGCCCTATGTGAAGTTTCATTGGAAATTGATACTTATGTTTCACTGAGAGTAAAACTTAAGTTTATCAAATTTGACTTGTTTAATCTTTAGATTAAAAAATGCATTTCAGGTAGGAAAAGATGCTCTGCAAAAGTCATACTGCTTTGGAGAGTTCTGTAAATATGATATAAGGAAGTCTGCCTCCGTCATTTAAAGAGACTCCTTATGAACTGTATTGTACAAGCTAGTTAATTCCTTCTCAGGGAAGAGCCCTTCAGTCTTGCGAATAGTCAACTTCAATGGTCTCCGTGCTCACTAATTAAGCAGAGAGGCTGACTGTCCATAGAGTTATGCCCATGAAACAGGCAACTTGCTGCTTTGAGAAGCCATGGCACAGTACACATAGTAATACATGCAGCCTTCAGACTTACTTATTGAAGGCTCATTTTGACGAAAAGAACGCCAAGTGGGCGTGTTATTGTGAGCAGGTGACTAAGATTCAAGGGGTAATGAGATGTTGTGTTATTGACTCTCTGTTGGTTTCTGTTATCTTAAAGGGAATGATAGGTTTTAGAATCTTAGAGCTAAGTGGCTAGTTCAAATTCAAATCTATGCTCTTTTTCAAATAGCAACTACTGGCATCTGAACTTCATTTACCTAAAGGCAGGCTTGAGCAAATGTAGTTGATTGTCGAAGGGAAAGGAGAAAAGTAAGGCACCGCTTCCTGGTGCAGTGATTGACAAGTCATTTTCTAAGAAAGGAGGCTGGGTATGACCAGAATTAGCTAATGTTCATTACATTGATCATCAGAAGCAGTTAACTATTTTCAACTTCAAACCACAG
Seq C2 exon
AGGAGAATCTGGTTCTGGAAAGACAGTGAACACCAAACTGATCATTCAGTATTTTGCCACCATGGCAGCCATAAGTGAGCCTAAGAAAAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
-Myh15:NM_001166210:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: