GgaINT0119195 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90794412-90795255:-
Coord C1 exon
chr1:90795110-90795255
Coord A exon
chr1:90794503-90795109
Coord C2 exon
chr1:90794412-90794502
Length
607 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
GATTTTCCTTTCCTTGGCAGGAA
3' ss Score
9.49
Exon sequences
Seq C1 exon
CTTGAGGGCTCGCTTGAGCAAGAGAAGAAAGTGAGGATGGATCTAGAAAGAGCAAAACGCAAACTGGAAGGAGATTTGAAGCTGACCCAAGAGAGTGTCATGGACTTGGAGAATGATAAGTTGCAAATGGAAGAAAAGCTGAAAAA
Seq A exon
GTAAGAAATATTTTCTGTTATACTAAGTAAAGCAGCACAGTTACTACTGCCTGATGTATTCAGGTGTGTCATTGTGGCCTGATGGTGGCTTAAAGGAAATTCCATCGCAGATGAGAGAGTGATGGAGGGGAAAATCACTGTTACTTGTTTGCAGTATACCTGAAACATTAGAACTGATTAGACTTATCAGAAATATATATATATATATATATACACATATATATATATATATTTTTTTTTTTTTTTTTTATGTAGTTTGTTTTTATTACTTAGAGGAGAAAGGAATCTTCTAAGTCATTCCTCCTAACTATAAGAGAATTGTTGAAAGACCTAACTCAATTAAGCATATTTTTCCTTTGAGTATGAAAATAACATTACTCTGTATGGCATAAAGAACAAAAAATGTAATTGCACAAATATTTGAAGTCTTGACTTGGAAACGACTGCTAAGATAGTTATGCATTTTTCTGCATATGGTGATACATAAGGATTGTTTTCATTTTTAGATCCATTAGGAGTTTTGTTGAACAACACTTTAAAAATTGCATGAGCCTAGCTTTGAACTGTGGAGAAAACTGTCACAGTGGGATTTTCCTTTCCTTGGCAG
Seq C2 exon
GAAAGAGTTTGAAATGAGCCAATTGAATTCCAAGATAGAAGATGAACAAGCTATTGTAATGCAGCTGCAGAAGAAGATAAAGGAACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.694 A=NA C2=0.226
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(0.5=2.0),PF0157614=Myosin_tail_1=PD(31.8=69.4),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGGGCTCGCTTGAG
R:
TCCTTTATCTTCTTCTGCAGCTGC
Band lengths:
230-837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]