DreINT0099888 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24957359-24958929:-
Coord C1 exon
chr11:24958784-24958929
Coord A exon
chr11:24957450-24958783
Coord C2 exon
chr11:24957359-24957449
Length
1334 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
GAATTGTTGATCTTTTATAGGAA
3' ss Score
7.47
Exon sequences
Seq C1 exon
TTGGAGGGCTCCTTAGAACAGGAAAAGAAATTGCGAATGGATCTGGAACGTTCAAAACGCAAGCTGGAGGGCGATCTGAAGCTGTCAATGGAGTCTGTCATGGACCTCGAAAATGACAAGCAGCAATTAGAGGAAAAGCTAAAGAA
Seq A exon
GTAAGATTTATTATGTGCCAGGACGCTGTAAAAATATGACACCATTTTCATTCGGAAACAAGAAACGTTGTTGTGATTTTTGGCCATTTATTTACATGACAGCAACAATTCCATTACACTTCAACTTGAGAAAAATGAAATAAGGAATTAAAAATACACCTATTATAAAGATTGCTATCTATTTATAAAGATTTTCATACTTTATATAGACCTTTTTCTTCGTTGCTGCATGGAGGGCGCAATAGTGGCCAGTGTCTTCCAATAGGACGCTTAGAAATTCCATTTACAGTGTTTCTCAACTGGAATTATTTATCCCAAAGTAACATTTTGAGTGGCTTACTGATTGTTTTTGTGATGCACAACTTAATTTTGAAAGATGTATGTTAAAGCGATTATACTTCTGTCAGATGTGGTTCAAGTGCGAGAGAAAGGCGTTCTCGTAATTCAGTGTCTGCCGTCAGATAAGATGTTGAAATGCAGCATAAGTTTTCCCGACCAGTCAGCTGTTATACTGTACTCCGCAGCTCTTCAATGCTCACAAACATCACACACATTACTTCACTGCATTATAGAGCAAACCATATTACTGGCATGTACATTACTGGACACTATGCTGGCTGATTTGGATGTGTATTGTAACTGGGAGCAGTTTATGTTTTGTTAGTTTGTATTGTGTAGTATTTACCATCTGTTTTTCTGTCATTTCAAAAGGCCACTTTATTTTCAATTTGTCAATCATTAAATCATTGTTAGTGGTACAGTACCAGTGTGTGTGTCAAACATTTTGTTGAATTATATTTGTTTGGGTTGGTTATATATTTGTAAAAAGAAAAAGAGTAAGTGTTTACTTTAGCAATGATAATGCTCCTTTTTAATGGCAGAAGATGCCATGTGACAGTAAGAATAAATGCCTCGCAGCAGTTGTTTTCATTCCTATTAGAAGGAATTTTTTTAAATGATCAGTCCAGGAGGTGGCGCTAATTGACAGCAATATTAGTTCGAAGACGTTAAAAGCAAGTAAAATAGATTAAAATGATCATTTCAAAGCTGCTTAAATGTTACTGTTTTTACACATCAAGCTGCCAACTGGAAATTTGTAGCATCCTGCTTACACATACATGCAAAGATAACTTTGCTTTCTATGAAAAAAGTTTATAGTGCCTTACAAACAAATGATATGTGTTTTGTTTTTGAGGCACTTAATAAAGGATTTTTTGCTTGTGTTTAGGTAAGCTAGATACTTTATGAAAACAGATGTTTTGTGAAAAACTTTTCTTTTTGTAGACTGTTACAGTATATTGTTAACATACCAATGAATTGTTGATCTTTTATAG
Seq C2 exon
GAAAGATTTTGAAATGAACCAGATCAGTTCAAAAATCGAAGATGACCAAGTGCTAATCATCCAGCTTCAAAAGAAGATCAAGGAACTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.796 A=NA C2=0.129
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(1.0=4.1),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGCTCCTTAGAACAGGA
R:
TGCAGTTCCTTGATCTTCTTTTGA
Band lengths:
234-1568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]