RnoINT0096566 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151145005-151145436:+
Coord C1 exon
chr3:151145005-151145150
Coord A exon
chr3:151145151-151145345
Coord C2 exon
chr3:151145346-151145436
Length
195 bp
Sequences
Splice sites
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
3' ss Seq
ATCCCACCATGTGCTCGCAGGAA
3' ss Score
7.77
Exon sequences
Seq C1 exon
CTGGAGTGCTCCCTGGAGCAAGAGAAGAAGCTTCGCATGGATACAGAACGTGCCAAGCGCAAGCTCGAAGGAGACCTGAAGCTGACGCAGGAGACAGTGACAGACACCACACAAGACAAGCAGCAGCTGGAGGAGAAGTTGAAGAA
Seq A exon
GTAGGTGTGGGCCTGATGGCCTCTCCTCAGCCCTGTTGCTGTGGGGAGGATACCAGGGCAGAGGTCATGTCCTGCCCTCTGTGGACCAGGACTGAGGACAGCAGGATCGAGGCTCCTTCAGGGCCTCACAGGAGGAGGTGGGCAGGTGGATAGCAGGTAGGGCCAGAGCTGGCTCATCCCACCATGTGCTCGCAG
Seq C2 exon
GAAGGATTCAGAGCTGAGTCAGCTGAGCCTGCGGGTGGAGGATGAGCAGCTCCTGGGGGCGCAGTTGCAGAAGAAGATCAAGGAGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.816 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(15.6=73.5),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGAGCAAGAGAAGAAGC
R:
TGTAGCTCCTTGATCTTCTTCTGC
Band lengths:
226-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]