GgaINT0010717 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2948527-2949346:-
Coord C1 exon
chr20:2949201-2949346
Coord A exon
chr20:2948618-2949200
Coord C2 exon
chr20:2948527-2948617
Length
583 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TCTGCCTTCTTTCTGTACAGGAA
3' ss Score
11.45
Exon sequences
Seq C1 exon
CTGGAAAGCTCTCTTGAACAAGAGAAGAAAATCCGCATGGACCTGGAAAGAGCTAAGAGGAAGCTTGAAGGAGATCTGAAGCTGACACAGGAGTCTGTGATGGATCTGGAGAATGACAAGCAGCAACTGGAGGAGAAACTCAAAAA
Seq A exon
GTGAGTGTGTGGTGTGTGCTGGGCTGTGTACGTTATCTGTCAGTGCCTGCTTCTAAACCAGGTAGACATGTGCTCTTTGCAGGAGCTGTTGTGATGTGGCTTTGAGCACTGCTGGTGTGATCAGCCCAAGCAAACGGGGGGTTTAGTTTTAATGGGCACTGTGCAGAGGTGCTGCAGGGGCTGCTGTCCTGAGGAGCTTCTCAGCTGCACAGACTGACAGATCAGGGAGCTATAGGACTTCCTTTGTACAGACTTGTCTGGCAGGATTCTAATGCGGAGCCGAGACCTCAGCTACAAGTACAAACTTCATCACCTTGTCACTTCCATCCCCAGCTCTAGTTGGGGAACTGGGGAGCAGCACCTAGGGAACTTGCAGGTAAAATCTAAGAGCCAGGGCCATCTGCCACCTCCCTCAGAGCATCCCATCTGCTGCTCTTCTCCCTGTTGGGCACTTTCCTATGAGGGTTAGTTTATTTTTCCTCTGGTCCTGGATAATACAGTGCAGGGAATACTTTTCCTCCGGCTTCAGGATGTGAAGGGCGTTTGTCTGAGCAGAGCTCAGCTCTGCCTTCTTTCTGTACAG
Seq C2 exon
GAAGGACTTTGAAATGAGTCAGCTGAACTCAAGGATTGAGGATCAGCAGGTGACTGAGGCCCAGCTGCAGAAGAAGATCAAGGAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.561 A=NA C2=0.355
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(50.0=69.4),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAAAGCTCTCTTGAACAAGA
R:
GGAGCTCCTTGATCTTCTTCTGC
Band lengths:
235-818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]