BtaINT0097369 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64906749-64907282:+
Coord C1 exon
chr13:64906749-64906894
Coord A exon
chr13:64906895-64907191
Coord C2 exon
chr13:64907192-64907282
Length
297 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ACGCCCACCCTCTCCCCCAGGAA
3' ss Score
8.72
Exon sequences
Seq C1 exon
CTGGAGTGCTCCCTGGAGCAAGAGAAGAGGCTGCGCATGGACACGGAGCGGGCCAAACGCAAGCTCGAGGGGGACCTGAAGCTGACGCAGGAGTCGGTGGCAGACGCTGCCCAGGACAAGCAACAGCTGGAGGAGAAGCTCAAAAA
Seq A exon
GTAAGTGTGGGGAGGGCCCAGCCCCGACCTCCTGCCGCGGGGGCCTCCTGAGCCTGCAGCCCGCTTCTCGTCGCCCCCAGGACTCTAGTCAGTGTTGCATCACAGCAGAGGTTGAACCGTAGGGTGAAGGGGGCCCACTTAGGGCCAGGCTCTAGGGCTGGGGCTTGAGAGGGAACTCTGGGGAGATCTTGAGGGCTACTCCAGGCACAGTGCCTCAGCACAGCATGTGTGCTGGGGCTCCCAGCAGGTTGGCGGCAGTTAGGACCTGGGCCGGCTCACGCCCACCCTCTCCCCCAG
Seq C2 exon
GAAGGATTCGGAGCTGAGTCAGCTGAACCTGCGGGTGGAGGATGAGCAGCTCCTTGGAGCCCAGCTGCAGAAGAAGATCAAGGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.796 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(15.2=71.4),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGGAGCAAGAGAAGAGG
R:
CTGCAGCTCCTTGATCTTCTTCT
Band lengths:
228-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development