MmuINT0103623 @ mm9
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155454490-155454945:+
Coord C1 exon
chr2:155454490-155454635
Coord A exon
chr2:155454636-155454854
Coord C2 exon
chr2:155454855-155454945
Length
219 bp
Sequences
Splice sites
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
3' ss Seq
ACCCCGCCATGCACTCCCAGGAA
3' ss Score
6.92
Exon sequences
Seq C1 exon
CTGGAGTGCTCCCTGGAGCAAGAGAAGAAGCTGCGCATGGACACAGAACGCGCCAAGCGCAAACTTGAAGGAGACTTGAAGCTGACGCAGGAGACGGTGACAGACACAACACAAGACAAGCAGCAGTTGGAGGAGAAGTTGAAGAA
Seq A exon
GTAGGTGTGGGGTAGGCAGGGTCTCTGGGCCTGATGGGCCCTCCTTCTCAGCCCCGTTGCTGTGGGGAGGATACCAGGGCGGAGGTCACGTCCTGCCCTCTCTGGATCAGAGCTATGTACAGCAGAGGCGCAGGATCGAGGCTCCTTAGGACCTCACAGGGGCAGACAGGTGGATAGCAGGTAGGGCCAGGGCTGGCTCACCCCGCCATGCACTCCCAG
Seq C2 exon
GAAGGATTCGGAGCTGAGTCAGCTGAACCTGCGGGTGGAGGATGAGCAGCTCGTGGGGGTGCAGCTGCAGAAGAAGATCAAGGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-Myh7b:NM_001085378:27
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.796 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(15.7=73.5),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGGAGCAAGAGAAGAA
R:
TGCAGCTCCTTGATCTTCTTCTG
Band lengths:
228-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: