BtaINT0097238 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53592856-53596474:-
Coord C1 exon
chr1:53596329-53596474
Coord A exon
chr1:53592947-53596328
Coord C2 exon
chr1:53592856-53592946
Length
3382 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GACAACTCTTTCCCTAACAGGAA
3' ss Score
10.45
Exon sequences
Seq C1 exon
CTTGAGGGTGCCCTTGAGCAGGAGAGCAAAGCAAGAATGAACTGTGAGAAGGAAAAGTGCAAAGTGGAGGGCGAGTTAAAGCTGAACCAGGAGAGCATGGACGACCTGGAGAGCAGGCAACTGCAACTAGCAGAAAAGCTGAGGAG
Seq A exon
GTGAGCCACCTTTCTGTGGACACGCAATTCTGGGAGACCTTATATTGAAGGAGACAGTTCTCTCACGGTGTTTATCCCAGTGACCCTAGGGCCAGATATCTCAAGACCTGCAGGGGAGGTTAAAAAGGATAACAAGCCTAGGAAGTTGAGGGTTTTTTATTTTTTGCTAGACTTTGAGATTACTCTTCTTTTTATAATTATATAATAACCTACAAGAAAGTGATTGAAAAGTCTGACTAGCAGATGTGAATGAAAGGTGTAAGACATAGCAGATGCAAATTATTAGAATTTGAAGTTACAAGTCAAAAAATAAAAGTGGCTCACTTCGTTTACTCATGAGATCAAGGGCTTAAAGTAAAAAAATCAAAAATAAATTCTAATATGAAGTCCATATACCCTCTGATCATTTTTAAAAACAAAACAAAACTTATATGCCAGATGTAACTTCATTAGACATTTATACAACTTTTTTGGTCTAGTAATTTACTTTTTAAGTATTAAACTTTAAAATTGAAAGCATGATCAAAATGAATAGACCTTCAGTTCACGCAGACTCCCAAGGAGTTCAGGGCAAGATGGCCCTATCAGTTGAATTTCATTATTCAGTGAAACAGATTTTCTTACCTTGTCCCTTTTGTCTCCCTCTGTTTAGCTAGACTTTCTTCTAACAACTAGGGATTTTCAAGTTATTTGAAATAAATAAGAAAGGGAAACAGTGAAATCTAAGAGTAAGATAAGGCCTGTCTGAAGTGGAGAGCACACTGGTTGTGGCACCCACAGTGAAGAAGAGAATCAGTGAGCAGCTATGAGCTTCTGGTTTTCCCTTCTGTGTATACGAGTTTCCATGATACATGCTTGTGGTCAGACTGGATTAATAGCCTATCAATAAGTTACTAAACTTGATAGGTGTTTGTAGACTTGATTAATAGCTTATCAATAACTTATTGAACTTGATAGGTGTTTGGAAAAGATGAAATAAGTAACCCTATGAATGTAGTGGAACAGTGAAAGGCAAAATGATGATACAGTCCCTTCAGCATTTAATTATGAAGATTGTGTTTCAGTTTGGCAAAGTGAAATGATAACTCCATGTCCTTGTAGGCCACAGGTCAAAGAGCTCTGGCATTTTAGAAACCTGTGTTTTGAGGAAATTATGAATTTATTATACAACCTTTTCTTTAAATGGACCTGTGTATATATGAAAACTTAATATATGAAAATGTGGCATTTTAAAATGGTGATGAGAGGATAGAATACTTAATAAATAGTGCCAAGATTATTAGCTATTCATCTTATGAGATAAAAGTTAAATTTCTTCCTCATGCTATTCACACACACACACAATCCAGTTGCATTAAAGAATTAAATGCAAAAATAAAGCTATAAAATCATTAGAAGATGCAGCATTATTCACAATAGCCAAGATGTAGAAACAACCTAAATCCCTATTGAATGAATGAATGAATGAATGAAGAAAATGTGATGTATACATTTAATGGATTATTATTCAGCCACTTTTTAAAGGAATTCCTGCCCTTTGTGACAACAGGGATAAACCTGAAGGACTTTATGCTAAATTAAATGTCAGCCACAGAAGGACAAATGCTGCATGATTCCATTTATAGGAGGCATCTAAAAACAGTCAAACTCCTAGAAACAGAGAGTAGAATGGTGGTTGCCAGAGTCTGGGAGGCAGGGGAAATGCAGAGTTGCTGTTTAGTGGTTATAAAGCTTCCATTAGGCAAGATGACTGAGTCCTAGAGATCTGTGTGATGTTCTGCCTATAGTTAATATTGTATTGCACACTTAAATATTTGTTGAGAGGGAAGATCTCATATTAAATGTTCTTCAGTTTAAAAAAACAATTAAAAGACAATATGGGTGGTAAGTCTTAGGAAACTGGCAGGCCAGACTTCCTGAATAAGTCACAAACCCCATCCAAAGGCATAAAAGGACTATGTTGATAAACTTGAAGTTAATACATCAACATTTTAAACATTTAGTGGCAAAAGCCAACATAAATGAAATTGGAACAAATTTGAAGCAGATACCAAAAAATAAATATCAAGAATATTAAAGGAAAATGTGTAATTCAATAATTAGATGAAAAACCTAACAGAAAAATGGACAAAGGACACAAGTGAGCAGGTCATTTGTTTTATTTTAAAATCCTCATAATTGATAACATGCTGTCATCACTAGTAAACAAGGACATTCATAATAAAACAGTGACACACTAGAAGTGTGCTAATATTAAATGTGAATGTAGAGAAATAACCTCAGACTGCTATTGGGGGCCAAAGTTATAAGTTTTTAGATACATACCTATAACCGATGCAGCAATTCCCTGCTCAGTATCCACTCTAGAAACACTCACATGTACGCAAGGGTGCACAGCATTATTTATAAAAGTAAAATTTAGGGGGAAAACTCAGTGATTATTAATAGGGAAGTGAATAAGAAAACCACATAATATCTAAGTCATAGACTAGTATTTCACAGTTAATTTCTAAGTGAAGTCATCTATGTGTGGGCTTCCGTGCTGGCTCAGTGGTGAAGAATCTAACTGCCAAGCAGGAGACATGGGTTCAATCCCTGGATCAGAAAGATCCCCTTGAGAAGGAAATGGCAACCTACCCCAGTTTTCTTGCCTAGGAAAGCCCACGTAGAGAAATAACCTCAGGAGGAGGAGCCTGGCTAGCTGTAGTCTTTGGGGTCGCAAAAGAGTTAGACAAGACTTAGCAATGAAACAATAACAAATCTATGTGTAGGCCAAAGTGGAAAAATCTCTGTGTGTTATTGAGTTAAAAATGTTGTACAGGGACTTCCCGGGTGGTTCAGTGGTTAAGAATCTGCCTTGCAATGCAAGAGATGTGGATTCGATCCCTCGTTGGGGAACTGAGACCCAAATGCCACAGAGCACCTAAGCCTGGCACCACAACTACTGATCCCGTGTGCTCTGGAGCCTGTGAGCCACAGCTAGGAAGTTGCACTGCAGCAAAAGATTCCTAGTGCCACAACTAAGATTCAACACAGTCAAATAAAATAAATATTAAAAAATATGAAATTATAAATCTAAATGTATATAATATTATACCATTCCCAGTAAAGAAAATGAAACTATTTCTACTGATACATAAGCACAAATATATGTCAGTACTTAGAAAAATGTCCAGAAGGAGCCACATCAAATTGATTATGGTGGTTACCTCTAGGGAAGGAACAGAGGCTGGGTATAATAGCCAAGGAGACTTCCGCTCTAGATGTAATAGTTGAATTTTTACAATGAATGACTTCATATATTATTACAATAATTTGAAGACTATTTAAACAAAATGTTATTACTCTGAGCAATTTCATTTGACAACTCTTTCCCTAACAG
Seq C2 exon
GAAAGAATTAGAAATGAATCAGATGAGGTCGAAGGTGGAGAATGAGAAAAGCCTGGTGGCTCAGCTTCAGAAGACGGTTAAAGAGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399:ENSBTAT00000032372:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.816 A=NA C2=0.581
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(14.9=67.3),PF087025=Fib_alpha=FE(41.4=100),PF131661=AAA_13=PU(25.5=71.4),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF087025=Fib_alpha=FE(25.9=100),PF131661=AAA_13=FE(21.9=100),PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development