RnoINT0096534 @ rn6
Intron Retention
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33643536-33645321:-
Coord C1 exon
chr15:33645176-33645321
Coord A exon
chr15:33643627-33645175
Coord C2 exon
chr15:33643536-33643626
Length
1549 bp
Sequences
Splice sites
5' ss Seq
AAAGTACCG
5' ss Score
0.88
3' ss Seq
TCGCTCTCTCTTCCTTACAGGAA
3' ss Score
11.92
Exon sequences
Seq C1 exon
CTGGAGGGATCCCTGGAGCAGGAGAAGAAGGTGCGCATGGACCTGGAGCGAGCAAAGCGGAAGCTGGAGGGTGACCTGAAGCTGACCCAGGAGAGCATCATGGACCTGGAGAACGACAAGCAGCAGTTGGATGAGCGACTCAAAAA
Seq A exon
GTACCGTGTTCCATACTGCCAGGGCCATTTATCCAGCCCAGCTCAGCTCACCCACCACAGTATAGGCTGAGCCAGGCAAGGGGCCATCCTAAGAGGCAATGGATGCTCAAACTGAGGGCAGAGCCTCCCTAACCCGCACATCAGATCCCAAGGTCCTCCCTAGCAAGGAGTCTCACTTGGATCTCTCAAGCACCTTGTCCCTGCTAGACCCCAGGGAGAGGTGAAAATAAAAACTTGCTTCCTTTGTGAGCACTCGGTCAGATAGGAGGAGAGGCTGCCCATAATTTCAAAGGAATCGCTCTGCTGTTCAAAAAAATGTAAGGGTTGGGTCATTTCTTTTTCTAGGTAGATTCTGGTTCCAATCTTTATTGCAAATCCTTCCCAAAGGTGCACACACAGACTTGAATAGTGAGCTGCAAAAACGTATTTTGATATTTGAGAATCTTATAGTACTTCAACTTGTATTTGCATAGGAGTCTTTACACGTCCCTAGGCACAGAGTTTGTTGAATGAATGAATGGATCACATAGATCACATATGGTCCTAATGGTTTTTCCACCTTCCTTTTTTTATATTTTATTTTTAATTGTGTTTGTGCATGTGTGTGTGTTTTAGTGCACACACATGTGAGTGCATCGCTCACAGAAGTCAGAAGAGGGCACCAGACGCCCCTAGAGCGGGCCTATCAGGCAGTTGTGAGCTGCACGGTGTGAGTGCTGAGAACCAATCTTGCTTCTTCTGGAAGAGTAGTTCTCTCACCTGCTCTCCTCAGCAGCCTCCTCAGAGTACTTACAAAGATGGTGTCTGCCATCCTATTTTATCACAGAGACAGCTAAGGCTCAAGAAGGTTAGGGAGTGGAAGGGAAGTGAGCATGCTCCAGGCACGTGATCGAGGTGTGAGACACCATCTTTATGAAGCCCAGCGCCATGCACAGTGAATACACACCAATTAAAAAAGAGAGAGAGAGATGACTGAGTTGCCTAAGCTAACAGTGACAAGTTAAAGACCACAGCACCAAAGAGAAAGAAAAAAGTGAAAAGGCCTTTGCAATAGTCTCATTACTTCACAGAGGAGAATACTTGGAATAAGAGGGAGAAGTCTGGGCTGGAGAGATGGCTCAGTAGTTAAGAGCACTGACTGTTCTTCCTAAAGGTCCTGAGTTTAAATCCCAGCAACCACATGGTGGCTCACAACCATCTATAATGAGATCTGGTGCCCTCCTCTGGTGTGTCTGAAGACAGCTACAGTATACCCACATATATTAAATACATAAATAACCACCCCCCCATTTTTTGTAAAAAAAAAAAAAGAGGAGAAAGCCCCACAGAGCCCCACTATGCTGCCCTGCTACAGGGTTTTTCATTGTATTTTTACTGGACTTGAACCTGACAGACAGCAGGTGTTACCCTTCCTTCAGGGTACCCATCCTAAATCACTCTTTAAAGTATTTTTTTGCCTGTACTCCATTGGTTTTATAATCTCTGACCTTCTGGTGGCTACTCCAAGTGCCTTCCTGACCTGCTACCCCTCGCTCTCTCTTCCTTACAG
Seq C2 exon
GAAGGACTTTGAGTTAAATGCACTCAACGCCAGGATTGAGGATGAGCAGGCCCTGGGCAGCCAGCTGCAGAAGAAGCTCAAAGAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983:ENSRNOT00000024186:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.449 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(31.5=69.4),PF0003816=Filament=FE(16.9=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0003816=Filament=FE(10.6=100),PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCAGGAGAAGAAGGTG
R:
TTGAGCTTCTTCTGCAGCTGG
Band lengths:
215-1764
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]