MmuINT0103584 @ mm9
Intron Retention
Gene
ENSMUSG00000053093 | Myh7
Description
myosin, heavy polypeptide 7, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:2155600]
Coordinates
chr14:55599158-55601148:-
Coord C1 exon
chr14:55601003-55601148
Coord A exon
chr14:55599249-55601002
Coord C2 exon
chr14:55599158-55599248
Length
1754 bp
Sequences
Splice sites
5' ss Seq
AAAGTACCG
5' ss Score
0.88
3' ss Seq
ACCCCCTTTCTCCCCTACAGGAA
3' ss Score
13.23
Exon sequences
Seq C1 exon
CTGGAGGGATCCCTGGAGCAGGAGAAGAAGGTGCGCATGGACCTAGAGCGAGCCAAGCGGAAGCTGGAGGGAGACCTGAAGCTGACGCAGGAGAGCATCATGGACCTGGAGAATGACAAGCAGCAGTTGGATGAGCGACTCAAAAA
Seq A exon
GTACCGTGTTCCATTCCGCCAGGGCCTTTATCCAGCCCAGCTCAGCTCACCAAGCAAGGGCCATCTTAAGAGGCAATGGGTGCTCAGACTAGGGGCAAAGGCTCCCTAACCCACACATCAGGTCATGGTCCTCCCTAGCAAGGAGTCTCACTTGGATCTCTCAGGCACCTTGTCCCTGCTAGGCCCTTGGGAGAGGTGAAAATAAAAGCTTGCTTCCTTTGTGAGCACTCAGTCACAAAGTGGGGGAAGAATTACACATTATTTCAAAGGAATTGCTCTGCTGTTCAAAGAATGAAGGGGTTGGGTCATTTATTTTTTCTAGCTAGATTCTAGTTCCAGTCTTTATTGCAAGTCCTTCCCAAAGGTGTGCATACAGACTTGGTGAATAGTGAGTTGCAAAAATGTATTTTGACATTTGAGGCTCTTATAGTATTTCAACTTGTATTTGCATAGGAGTCTTCACACTGTTCTAGGCCCAGAGTTTGTTGAATGAATGAATGAATGAATGAATGAATGAATGAATGAAAGAAATATGGTCCTAACAGCTTTTCAACCTTCTTTTTTTATATTTTATTTTTAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTTACAGAAGCTGGAAGAGAGCACCAGACCCCCTGGAACTGGCCTATGAGGCAGTTGTGAGCTACATGGTATGAGTGTTGAGAACTGATCTTGCTTCTTCTAGAAGAGCACAACTCCCAATTGCCCTCCTCAGAATCCCCACAAAGATAGTGTCCGTCATCCTACTTTACTAAAGAGACAGCTAAGGCTCAGAAAGGTTAAGGAGTAGAGAGGGAAGTGAGCATGATCAAGGTGCATGGTCTGGTGTGAGAAACCATCCTTATGATCCTAGCACTATGTACAGTGAATATACACCAATTTAAAAAAAAAAAAGAGAGAGGCAACTGAGTCACCTAAGCTAACAGTGACAAGTTAAAGACCACCAGCATCAAAGAGAAAGAAAAAAAAGGCCTTTGCAATAGTCTCATTACTTCACAGAGGAGAAAACTTGGGATAAGAGGGGAAAGCTTGCTGGGCGGTGGTGGCACACACCTTTAATCCCAGTACTTGGGAGGCAGAGGCAGGCGGATTTCCGAGTTCAAGCCCATCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGTTACACAGAGAAACCCTGTCTCGAAAAACCAAAAATAATAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAGGGGAAAGCTTGCTGGAGAGATGGCTCAGAGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAGAACATTGATAGTGTACACTCATACATATTTAATAATAAATAAATAATTTTTTTAAAAGAAGGAAAAGCCCCACAGAGCCCCACCCCACCACCCTGCTGCAGGGCTTTCCATTACATTCTTCCTGGACCTGAACCCGACAGCAGGTGTTATCCTTTGGGCATCCTAAATCACTCTTGGAAGTTTTTTGTTTTGTTTTATTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTCCTGTACTTTATTGGTTTTATAGTCTGCAATCTCTGGTGGATAGTCAGGTGCCTACCTGGCCTGCTACCCCACCCCCTTTCTCCCCTACAG
Seq C2 exon
GAAGGACTTTGAGTTAAATGCACTCAATGCCAGGATTGAGGATGAGCAAGCCCTGGGCAGTCAGCTGCAGAAGAAGCTCAAGGAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053093-Myh7:NM_080728:26
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.449 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(0.1=0.0),PF0157614=Myosin_tail_1=PD(26.4=69.4),PF0003816=Filament=FE(17.0=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0003816=Filament=FE(10.6=100),PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCAGGAGAAGAAGGTG
R:
CCTTGAGCTTCTTCTGCAGCT
Band lengths:
217-1971
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: