GgaINT0132879 @ galGal4
Intron Retention
Gene
ENSGALG00000013781 | MYH7
Description
Gallus gallus myosin, heavy chain 7, cardiac muscle, beta (MYH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001001302]
Coordinates
chr19:19709-20047:+
Coord C1 exon
chr19:19709-19854
Coord A exon
chr19:19855-19956
Coord C2 exon
chr19:19957-20047
Length
102 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGCA
5' ss Score
-2.94
3' ss Seq
TGGTGTTTCTTCTCTTCCAGGAA
3' ss Score
11.61
Exon sequences
Seq C1 exon
CTGGAGAGCTCACTGGAACAGGAGAAAAAGATACGGATGGACCTGGAACGAGCCAAAAGGAAGCTGGAAGGTGACTTAAAGCTAGCTCAGGAGAGCATTATGGACCTGGAGAATGACAAGCAGCAGCTGGAGGAGAGGCTGAAAAA
Seq A exon
GTAGCAAACTGCCCACTACCTCTTCCATCCCCTTGTCTCTTACTCATAATCCTGCTCTTCTCTAAGAACCTGGGACTATGACTGGTGTTTCTTCTCTTCCAG
Seq C2 exon
GAAAGACTTTGAACTCAACACACTCAATGCTCGAATTGAGGATGAGCAAGCGATTTCTGCCCAGCTCCAGAAGAAGCTGAAAGAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000022380:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(26.4=69.4),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAGCTCACTGGAACA
R:
TCAGCTTCTTCTGGAGCTGGG
Band lengths:
226-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]