RnoINT0096511 @ rn6
Intron Retention
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33616829-33617307:-
Coord C1 exon
chr15:33617162-33617307
Coord A exon
chr15:33616920-33617161
Coord C2 exon
chr15:33616829-33616919
Length
242 bp
Sequences
Splice sites
5' ss Seq
GAAGTATGC
5' ss Score
4.65
3' ss Seq
ACGCGTCCCTTCTACTCCAGGAA
3' ss Score
9.18
Exon sequences
Seq C1 exon
CTGGAGGGATCCCTGGAGCAGGAGAAGAAGGTGCGCATGGACCTGGAGCGAGCAAAGCGGAAGCTGGAGGGTGACCTGAAGCTGACCCAGGAGAGCATCATGGACCTGGAGAACGACAAGCTTCAGCTGGAGGAAAAGCTCAAGAA
Seq A exon
GTATGCTCTGTGGTGGGCGGGGGCTGGAGGGGTGACAAGGGGTGTTTCTGGCCTGGTAGCCAGGGCACTGAGTGCTACACTTCTGCTGGCTTCACTTCCCTGGGCACACTGAAAGTGAGGGCAGTCAAGGCTCTACCCCATTGCTGTCTGAGCCAGGTTTTGGGGGGCTGGTTCTGGCATAGAGTGATAAAGACAGGCCCAGAGGAAGGACGACCATCACTTACGCGTCCCTTCTACTCCAG
Seq C2 exon
GAAAGAGTTTGACATCAGTCAGCAGAACAGTAAAATAGAGGATGAGCAGGCCCTGGCCCTTCAGCTGCAGAAGAAACTGAAGGAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757:ENSRNOT00000023302:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=NA C2=0.129
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(35.5=79.6),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCAGGAGAAGAAGGTG
R:
TTTCCTTCAGTTTCTTCTGCAGCT
Band lengths:
220-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]