MmuINT0103544 @ mm10
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:54952246-54952719:-
Coord C1 exon
chr14:54952574-54952719
Coord A exon
chr14:54952337-54952573
Coord C2 exon
chr14:54952246-54952336
Length
237 bp
Sequences
Splice sites
5' ss Seq
GAAGTATGG
5' ss Score
3.5
3' ss Seq
TCACGCCCCTTCTCCTCTAGGAA
3' ss Score
11.79
Exon sequences
Seq C1 exon
CTGGAGGGATCCCTGGAGCAGGAGAAGAAAGTGCGCATGGACCTAGAGCGAGCCAAGCGGAAGCTGGAGGGAGACCTGAAGCTGACCCAGGAGAGCATCATGGACCTGGAGAATGACAAGCTTCAGCTGGAAGAAAAGCTCAAGAA
Seq A exon
GTATGGCCCGTGGTGGGCAGGAGGGGCTGACAAGGGATAGGTTTCTGGCCTGGTAACCGTGGCGCAGGATGCTGTGTTTCTACTGGCTTGGCTTCCCTGGACACACTGAAAGTGAGGGCAGTCAGGGCTCAACCCCTTTGCTGTCTGGGCCAGGGTTTGGGGGCTGGTTCTGGCATAGAGCAATAAGACGGGCCCAGAGGAAGGGCGACCCTCAGTTTCACGCCCCTTCTCCTCTAG
Seq C2 exon
GAAAGAGTTCGACATCAGTCAGCAGAACAGTAAAATTGAGGACGAGCAGGCCCTGGCTCTTCAGCTGCAGAAGAAACTGAAGGAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752:ENSMUST00000081857:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.161
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(35.8=79.6),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCAGGAGAAGAAAGTGC
R:
TTTCCTTCAGTTTCTTCTGCAGCT
Band lengths:
220-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types