BtaINT0097338 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040053 | MYH7
Description
myosin-7 [Source:RefSeq peptide;Acc:NP_777152]
Coordinates
chr10:21364515-21364997:+
Coord C1 exon
chr10:21364515-21364660
Coord A exon
chr10:21364661-21364906
Coord C2 exon
chr10:21364907-21364997
Length
246 bp
Sequences
Splice sites
5' ss Seq
GAAGTAGGA
5' ss Score
2.43
3' ss Seq
GTCCCCTCCTTCTTCTCCAGGAA
3' ss Score
11.91
Exon sequences
Seq C1 exon
CTGGAGGGATCCCTGGAACAGGAGAAGAAGGTACGCATGGACCTGGAGCGAGCTAAGCGGAAGCTGGAGGGTGACCTGAAGCTGACCCAGGAGAGCATCATGGACCTAGACAATGACAAACTGCAGCTGGAAGAAAAGCTCAAGAA
Seq A exon
GTAGGAGCGTATGGAGGCCGGGAGGGGCCCTGGGGGTGTCTTGCCTGAGGGTTAGAGCTCAGGGTGCTGCATAGCCTCTGGCCAAGACTGCCCAGGGCACAGTGGGAGCAAGCACGTCAATCACAGCCCTTCCCCTGCCTTCACTCTTGGGGGCCAGAGGGAGAGGAGTGGTCCTTGCATGCAGAGGCAGGAGGAGAGGATGAGGGCAGAGAAAAGAAAACCTCCTGTCCCCTCCTTCTTCTCCAG
Seq C2 exon
GAAGGAGTTTGACATTAATCAGCTAAACAGTAAGATTGAGGATGAGCAGGCACTGGCCCTTCAGCTGCAGAAGAAACTGAAGGAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040053:ENSBTAT00000007359:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.245 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(55.7=79.6),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACAGGAGAAGAAGGTACGC
R:
GGTTTTCCTTCAGTTTCTTCTGCA
Band lengths:
221-467
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development