MmuINT0103544 @ mm9
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:55571083-55571556:-
Coord C1 exon
chr14:55571411-55571556
Coord A exon
chr14:55571174-55571410
Coord C2 exon
chr14:55571083-55571173
Length
237 bp
Sequences
Splice sites
5' ss Seq
GAAGTATGG
5' ss Score
3.5
3' ss Seq
TCACGCCCCTTCTCCTCTAGGAA
3' ss Score
11.79
Exon sequences
Seq C1 exon
CTGGAGGGATCCCTGGAGCAGGAGAAGAAAGTGCGCATGGACCTAGAGCGAGCCAAGCGGAAGCTGGAGGGAGACCTGAAGCTGACCCAGGAGAGCATCATGGACCTGGAGAATGACAAGCTTCAGCTGGAAGAAAAGCTCAAGAA
Seq A exon
GTATGGCCCGTGGTGGGCAGGAGGGGCTGACAAGGGATAGGTTTCTGGCCTGGTAACCGTGGCGCAGGATGCTGTGTTTCTACTGGCTTGGCTTCCCTGGACACACTGAAAGTGAGGGCAGTCAGGGCTCAACCCCTTTGCTGTCTGGGCCAGGGTTTGGGGGCTGGTTCTGGCATAGAGCAATAAGACGGGCCCAGAGGAAGGGCGACCCTCAGTTTCACGCCCCTTCTCCTCTAG
Seq C2 exon
GAAAGAGTTCGACATCAGTCAGCAGAACAGTAAAATTGAGGACGAGCAGGCCCTGGCTCTTCAGCTGCAGAAGAAACTGAAGGAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-Myh6:NM_001164171:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=NA C2=0.145
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(53.0=71.4),PF0157614=Myosin_tail_1=PU(31.1=28.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(66.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCAGGAGAAGAAAGTGC
R:
TTTCCTTCAGTTTCTTCTGCAGCT
Band lengths:
220-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: