BtaINT0097313 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009703 | MYH7
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MM07]
Coordinates
chr10:21336152-21337475:+
Coord C1 exon
chr10:21336152-21336297
Coord A exon
chr10:21336298-21337384
Coord C2 exon
chr10:21337385-21337475
Length
1087 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGCG
5' ss Score
-2.57
3' ss Seq
CGGTCCCTTCTTCCTCGCAGGAA
3' ss Score
10.17
Exon sequences
Seq C1 exon
CTGGAGGGATCCCTGGAGCAGGAGAAGAAGGTGAGAATGGACCTGGAGCGAGCCAAGCGGAAGCTGGAGGGTGACCTGAAGCTGACCCAGGAGAGCATCATGGACCTGGAGAACGACAAGCAGCAGCTGGATGAGCGGCTCAAAAA
Seq A exon
GTAGCGTGTTCCCTGCCCCATCACCCATCCTCCTCCCCCACCCAGCATCCTGGTCCATGCATGGAAGTACTAGCTGACTCAACAGATCCATCCTCAGAGGCAACAGCCTCATGCAGCCTCCATAAGAGGGTGCAAAACTGTGGGCAGAGCCTCCAGGAAGAGAGCTTTCCTCCCCCAGACATGCACATCAGGCCCCAGCAGGCCTCCCTGGCAAAAGTCTAACCCGGATCCCTCCAGCCCTCTCTTCCTGCTGGGCACTCGCCCCCTTTATACACAAGTCTCTTTGGAGACCAGTTGCATAACACACAGGAAAGTTCCACACAAAAGCCTCTCAGGAAAGTCCTTTCAGGTCCTTCACAGAGAGCCCAGAGGACCACAGAGAAACGTGGTCAGCCACCACTTGTGAGCAGGGTCTGGCTACTTCTTTAATGGCCTTGTGGTTCCAATTCTTATTGCAAGACCTTCCAAAATGTGTAGATCCACATTTCACACTTGGCAAAGAGTGAGTCTGCCGCACATATTCAGATAATCAAAGATCTTCTGTTGCTTTAGGGTCAGGACTCTGAAAGGCTCTGAGACTCATCCTGATCAACAGCCTCCCCAGAAAGTCTTCACACTTCCCCAGGCACAGTACTTGTTGAATGAATGAATGTATGATCCCACTGATCCTCAAACGACCTTTTAAGAATGGTACTTTAACCCCACTTACCAAAGAGGAAAGGAAGGCTTGGAAAGGTTACCAAATTGCCCAAAGTAACAGAGAATTAAAGACCATCCGAGCTAAAAGGTGCCTTTGAGTCAATCTAGTCCAACGCCCTCGTTTTACAGACCAAAGAAGGGAGCATCTCAGAGCCCAGGTCCTGTCCCTCCACCTGCAGTGCTCTTCCTGTTGTACTTCCCATTGAACTTCAGTCCTCCAGCAGGTGTTACACTTTCAAGGAGCCTACAGCAGCCCTGGAAGCTGGTTTTTTTTTTTTTTCCCATGAAATCCTGCTCCTCATTTGTTTCATTACCATCTCCAACCACTGACAGCCCCTCCTTAAGCCCGATCAGCCTTCCTTGCCTCACGGTCCCTTCTTCCTCGCAG
Seq C2 exon
GAAGGACTTTGAACTGAATGCCCTCAATGCGAGAATTGAAGATGAGCAGGCCCTGGGCAGTCAGCTGCAGAAGAAGCTCAAGGAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009703:ENSBTAT00000061306:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.449 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(0.5=2.0),PF0144213=Apolipoprotein=PU(18.2=73.5),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0144213=Apolipoprotein=FE(15.2=100),PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCAGGAGAAGAAGGTGA
R:
CCTTGAGCTTCTTCTGCAGCT
Band lengths:
216-1303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development