GgaINT0128380 @ galGal3
Intron Retention
Gene
ENSGALG00000023800 | Q90900_CHICK
Description
NA
Coordinates
chr18:488191-488520:-
Coord C1 exon
chr18:488375-488520
Coord A exon
chr18:488288-488374
Coord C2 exon
chr18:488191-488287
Length
87 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
ACCATGTATCTTGTGCAAAGGAA
3' ss Score
5.23
Exon sequences
Seq C1 exon
CTGGAAGGGTCCCTGGAGCAAGAGAAGAAGCTGCGCATGGACCTCGAGAGAGCTAAGAGGAAACTTGAAGGAGACCTGAAGATGTCCCAGGATACCATAATGGATTTGGAAAATGATAAACAGCAGCTGGATGAGAAACTGAAGAA
Seq A exon
GTAAGTGTGGTTGTGGGACATCTGAGTGCTGGATGGGTACACTTAGATGTTTTGTTCAGGCACTAACACCATGTATCTTGTGCAAAG
Seq C2 exon
GAAAGACTTTGAAATCAGCCAGATCCAGAGCAAAATTGAGGATGAGCAAGCCCTGGGCATGCAGTTACAGAAGAAGATCAAGGAGCTGCAGGCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023800:ENSGALT00000001427:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.939 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(0.5=2.0),PF0157614=Myosin_tail_1=PD(24.4=67.3),PF0003816=Filament=FE(16.8=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0003816=Filament=FE(11.2=100),PF0157614=Myosin_tail_1=FE(3.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAAGAAGCTGCGCATGG
R:
CAGGGCTTGCTCATCCTCAAT
Band lengths:
182-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]