MmuINT0103429 @ mm10
Intron Retention
Gene
ENSMUSG00000033196 | Myh2
Description
myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]
Coordinates
chr11:67188922-67189239:+
Coord C1 exon
chr11:67188922-67189067
Coord A exon
chr11:67189068-67189148
Coord C2 exon
chr11:67189149-67189239
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
CTGTGTTTCTTTTCTTTAAGGAA
3' ss Score
10.22
Exon sequences
Seq C1 exon
CTTGAAGGGTCCTTGGAGCAAGAAAAGAAACTTCGCATGGACCTAGAAAGAGCCAAGAGAAAACTTGAGGGCGACTTGAAGTTAGCCCAGGAGTCCATCATGGACATTGAAAATGAGAAACAGCAGCTCGATGAAAGGCTCAAAAA
Seq A exon
GTAAGCAGGAAAGAACGGCTCTGGGCTGTGCTTCCGGTTGGCTACAGACGGAATTTCTACACTGTGTTTCTTTTCTTTAAG
Seq C2 exon
GAAAGAGTTTGAAATGAGCAATCTGCAGAGCAAGATTGAGGACGAGCAGGCCATCGGCATTCAGCTGCAGAAGAAGATCAAGGAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033196:ENSMUST00000018641:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.551 A=NA C2=0.258
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(29.6=81.6),PF0003816=Filament=FE(16.8=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0003816=Filament=FE(10.5=100),PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGGTCCTTGGAGCAAGA
R:
TCTTGCTCTGCAGATTGCTCA
Band lengths:
179-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types