RnoINT0096280 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53729446-53729763:+
Coord C1 exon
chr10:53729446-53729591
Coord A exon
chr10:53729592-53729672
Coord C2 exon
chr10:53729673-53729763
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
TTGTGTTTCTTTTCTTTAAGGAA
3' ss Score
9.75
Exon sequences
Seq C1 exon
CTTGAAGGGTCCTTGGAGCAAGAAAAGAAGCTTCGCATGGACCTAGAAAGAGCCAAGAGAAAACTTGAGGGTGACTTGAAGTTAGCCCAGGAGTCCATCATGGACATTGAAAATGAGAAACAGCAGCTTGATGAAAGGCTCAAAAA
Seq A exon
GTAAGCAGGAAAGAATGGCTCATGGTTTTGCTTCCAGTTGGCTACAAATGGAGTTGCAACATTGTGTTTCTTTTCTTTAAG
Seq C2 exon
GAAAGAGTTTGAAATGAGCAACCTGCAGAGCAAGATCGAGGATGAGCAGGCCATCGGCATTCAACTGCAGAAGAAGATCAAGGAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.551 A=NA C2=0.258
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(25.6=69.4),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGGTCCTTGGAGCAAGA
R:
ATCTTGCTCTGCAGGTTGCTC
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]