BtaINT0097270 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007090 | MYH2
Description
Bos taurus myosin, heavy chain 2, skeletal muscle, adult (MYH2), mRNA. [Source:RefSeq mRNA;Acc:NM_001166227]
Coordinates
chr19:30146778-30147097:-
Coord C1 exon
chr19:30146952-30147097
Coord A exon
chr19:30146869-30146951
Coord C2 exon
chr19:30146778-30146868
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
CTTTACTACTTTTCAAAAAGGAA
3' ss Score
4.86
Exon sequences
Seq C1 exon
CTTGAGGGGTCCTTGGAGCAAGAAAAGAAACTTCGCATGGACCTAGAGAGAGCCAAGAGGAAACTTGAAGGTGATCTCAAGTTGGCCCAAGAGTCCATAATGGACATTGAAAATGAAAAACAACAACTTGATGAAAAGCTCAAAAA
Seq A exon
GTAAGTATGAAAGAATTGTTTATGGACTTGCTTCCAATGTTGACTATGGACTCAACTGTTATCCTTTACTACTTTTCAAAAAG
Seq C2 exon
GAAAGAGTTTGAAATCAGCAATTTGCAAAGCAAGATTGAAGATGAACAAGCACTTGGCATTCAACTGCAGAAGAAGATCAAAGAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007090:ENSBTAT00000012797:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.592 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(27.7=79.6),PF0003816=Filament=FE(16.9=100),PF0157614=Myosin_tail_1=PU(1.6=28.6)
A:
NA
C2:
PF0003816=Filament=FE(10.6=100),PF0157614=Myosin_tail_1=FE(3.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGGACCTAGAGAGAGCCA
R:
CAGTTGAATGCCAAGTGCTTGT
Band lengths:
179-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]