MmuINT0103429 @ mm9
Intron Retention
Gene
ENSMUSG00000033196 | Myh2
Description
myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]
Coordinates
chr11:67002424-67002741:+
Coord C1 exon
chr11:67002424-67002569
Coord A exon
chr11:67002570-67002650
Coord C2 exon
chr11:67002651-67002741
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
CTGTGTTTCTTTTCTTTAAGGAA
3' ss Score
10.22
Exon sequences
Seq C1 exon
CTTGAAGGGTCCTTGGAGCAAGAAAAGAAACTTCGCATGGACCTAGAAAGAGCCAAGAGAAAACTTGAGGGCGACTTGAAGTTAGCCCAGGAGTCCATCATGGACATTGAAAATGAGAAACAGCAGCTCGATGAAAGGCTCAAAAA
Seq A exon
GTAAGCAGGAAAGAACGGCTCTGGGCTGTGCTTCCGGTTGGCTACAGACGGAATTTCTACACTGTGTTTCTTTTCTTTAAG
Seq C2 exon
GAAAGAGTTTGAAATGAGCAATCTGCAGAGCAAGATTGAGGACGAGCAGGCCATCGGCATTCAGCTGCAGAAGAAGATCAAGGAGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033196-Myh2:NM_001039545:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.551 A=NA C2=0.258
Domain overlap (PFAM):
C1:
PF135141=AAA_27=FE(6.5=100),PF0157614=Myosin_tail_1=PD(27.9=79.6),PF0003816=Filament=FE(17.0=100),PF0157614=Myosin_tail_1=PU(2.7=28.6)
A:
NA
C2:
PF135141=AAA_27=FE(4.1=100),PF0003816=Filament=FE(10.6=100),PF0157614=Myosin_tail_1=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGGTCCTTGGAGCAAGA
R:
TCTTGCTCTGCAGATTGCTCA
Band lengths:
179-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: