GgaINT0119196 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90792918-90794502:-
Coord C1 exon
chr1:90794412-90794502
Coord A exon
chr1:90793308-90794411
Coord C2 exon
chr1:90792918-90793307
Length
1104 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
3' ss Seq
TTCTCCTTTCTCTTTGATAGGCT
3' ss Score
9.47
Exon sequences
Seq C1 exon
GAAAGAGTTTGAAATGAGCCAATTGAATTCCAAGATAGAAGATGAACAAGCTATTGTAATGCAGCTGCAGAAGAAGATAAAGGAACTACAG
Seq A exon
GTTAGCTTGCTTCTTTCTCATTTCTCTTAGGACGAGCCTCCCAAGGCTGGATATGTCTTTGGGCAACATTTTGTAGTAGAAGGTCTTCCTGTCCATTACAGAGAGGTTGGAACTGGATAGTCTTTTAGGTTCCCTCAATCCAAGCCACCATGTGATTATCTGCCTCACTGAAGGGCTTTGCAGAGACTTTCACAGCTAGTTGCCACTCAGCTTTGAGACCCAAAGTAGTGCAACTTCGATCCCTTTTCCCTCAAGGAACTTATTCCACGGGACGTATGACTGCAGAATGCTAGTAGTTTCAGGAAAGGCAGAAAGGCTTCATTGTTTTCTTTTAAGCTTGGAACCTTGCAGCTGAGGATGGCTGTGGTTTCCAGGGAGGAGTTCAGCAATTAATAGGAATGGATTTGAAATTTAGGGTAAGAGCTCAAATGCACATAAATTTTCAACCGAAATCGAAAGGCCAAAGTCAGCCAGCACAGTCCAAACAAAATATCAACTCTGATTCTTCTATAAATAAAGAACATTTGGATAACTTGAATGTGAAGCATATGTTCATCAAAACAACTGTTTCATTAAAAAACAAAAAACAAAACAAACAAACAAACAAAAAACCTCCCAGTGAATAGTGGTTACTAACTAAATTCTAGACACTGCTTTATTTAAAGTTTTCGGTCTTAAAACTCCTAGAGAGAAGTTACTTCTGTCACATAGCTCTTAGACTGGAGGCAGAGAACCCTTACAATTCCCCTCAATGGCAATCAGTTGTTACTCCTACTAGGAAATAACTTATCTCCCATACGTGATCTATATGTGAAGTACATGACAGTATACAAGGTCAACGTACTTTACCTGGGTGTCTTGAACTAAAGCTTGTGGGGAAAATTGTAGAACTCAGAGAGCTATTTACTATGAGAAAGATGTCTTGTCCTCTGGCTCAGTATCTGATTTATTGACACAGATGGGCAAATCCTCTAACTGCTGCATTTCCTCCTCTGTTGTGAAGTGTTGGGTTGGCAGAGAATTTCACTGTTTGTAACATGCTTCAAGGTTTTCTGGTGGGAATCATCTGGAGGTGACCCCAAGGTTCTCCTTTCTCTTTGATAG
Seq C2 exon
GCTCGTATAGAAGAGCTGGAAGAGGAGCTGGAAGCAGAAAGAGCTGCTCGAGCCAAGGTGGAAAAGCAGAGATCAGATTTGGCCCGAGAGCTGGAGGAATTAAGTGAGCGGCTTGAAGAGGCTGGGGGTGCCACTGCTGCCCAGCTGGAGATGAACAAGAAACGTGAAGCTGAGTTCCTGAAGCTGCGGCGTGACCTCGAGGAGGCCACGCTGCACTATGAAGCCACAGCTGCTGCTCTGAGGAAGAAGCATGCGGACAGCGTGGCTGAGATGGGGGAGCAGCTGGACAACCTGCAGCGCGTCAAGCAGAAACTGGAAAAGGAGAAAAGCGAGCTGAAAATGGAAGTGGATGATCTGACATCCAACATGGAGCAAACGGTTAAGGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=NA C2=0.708
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(15.0=100),PF0003816=Filament=PU(14.2=26.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGCAGAAGAAGATAAAGG
R:
TTCCAGTTTCTGCTTGACGCG
Band lengths:
349-1453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]