RnoINT0096442 @ rn6
Intron Retention
Gene
ENSRNOG00000061038 | Myh15
Description
myosin, heavy chain 15 [Source:RGD Symbol;Acc:1565858]
Coordinates
chr11:54258658-54261158:-
Coord C1 exon
chr11:54261068-54261158
Coord A exon
chr11:54259048-54261067
Coord C2 exon
chr11:54258658-54259047
Length
2020 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
AACATTATTTATTCCCCCAGACT
3' ss Score
7.21
Exon sequences
Seq C1 exon
GAAAGAATTTGAAATGGGTCAGATGAATTCAAAAGTGGAGAATGAGAAGAACCTGGTGTCTCAGCTTCAGAAGACGGTGAAAGAGCTCCAG
Seq A exon
GTAACCAGTTATAAGACATCTCTGTACATACACCAGCATTTAGATCCATGAATGCTGGCACTCCACAACCCATACCCTTAGCCAGCTATAGACAGAGGGAGTAAAGAGTAGCAATTAAGAAGGCAAGTGGAATCCTACCAATGTATGACCCTGCAGGGATAATTACCTTTTAAGCTTAAATTCCTTTCTACTAGGAATAATAACAAGTAGGTTGTTCTTTGAACTTTTGTTATGGACTATACTTTGTGCTAAATTCCAACCACATAATTTTTAACACATTAATCTTAACACCATTGAGTTCAAATTATTAAATCCAACAAGATATTTACATGAGAAAAACAGTAGATGACCCATTGTGCCATTAGTTTAGTGTTTTAACTTTTATGGTTAGAAAGCAATTAATTTAAAATTCAGTAGATTCTGTAGCTATTCATAAACCAAAAGCATTATTTGATAATGGATAGCAATTTGGAAGTTTTAGACGAAGTGGTTATTTTACACTACATCACCATGTTATAAGGCAATTAAAAAACACTGTTATGGCTATACACATATGCGTCTATGATGTTACATATATATCCATATAAATGTTTTTATGTCGCATTAACATCTCAATAATGCTTCCTTTGCTTCTTATCATCTGGGATATTTTGAGCCTGATAAGAAAACCATTCTCATTGTGAATATGCTGTATTTTCAGAAACAACATTAAGCACCAAGAATCATAATTTCTGGGCATATCTTCAAATGACACTTAACTTTACCCAAAATAAAATAAAACTGTCAATTCATCCAAAAGAAACATTTTTGTACCTTAACGACTCTCTGAAGTTTATTTATAAAGAAATGCTTCTGATGGTTTTGAGCCAAGCACAGTATTTTTTGAGATATTTCAAATTCAATAACCACTTAACAGGAGCTGCATTTACTTGTAGGTAGAAATTAAAGCTTTTTAAGTACTTCCCAGGAGACACCTTGGATACAAAACTGGTAAATTAGTTAGCTGGTATGACCTAGAGAAATAGCTTTCTCTAAGCCACTTTATTTAATGTAAAGAAAAACATTTTCTAAATAATCTTCTCCACTAACCTGAACCTAATTACCCAAGACATTATTAATGTACATCACTGCACTGGATACACTGGCTCTATGATTGTTTCCAGAACGTTTTACCACTGCACTAGAAGGTCCAGAGTTCTGAGAAATTTATCAGTACTTTTGTTTACTAATACCCCTGTCTATAATAGTATCTTAGACCACTGAGACCACTGTCCCTTCACTTTAGTAGTTCCCATTCCTTCACCAATTCTAATTCATCACTGAGAATCTACTACTTGGAATCTGAAAACTAAGAAGACAATGGAGTAACTTGGCCTGACATGTGTGTAGGGTTGAGTAGATGCTGTTTCTTAAGGGCAAGTTGCTTAAATGGGTGTTTATTCTGTGGTCAGAATTTTGAAATCTTTAGTTATTAAGATGGTTAAACAAATTGCAGATGGAAACATTTTTTTTGCATACATGAGTCACTATGTTATATATTTGTAAGCTACCTTTAAAATTTGTTCTTGGCATATGAAAGAAGTTCCTTTAAAATGTTTCTTTTTATGAGAAACCTGTTTCTTTTTTATTGAAAATAGATTTTGTTTATCCAATATATTTTCCTCACAGTTTCCCTTCCTCCAAATCCTTCCAGATCCTTCTCACATACCTACCGCACCTTTCTTTTTTGAGGGGGGCTCTTTTAGTAAGAATCTTCCTCCATGTGCATAATTTAATGATGCTGGCTATAATGTAAGGCCGGGGGAATCTGGAAGTACTAAAAATGTAATTATGCTCCTTGTATTGATTTGGAGAAAAATCACTTCATTTCAAGGTGTTCAATTTCCTTTAGTTATAAATTAGCAATGAAAAATGTCATGTTTGCTTTTTAAGATGAGACAAAAATTAATGTGATAACCTTGTTGCACATAGAAATATGTTACAAGTAATTATTACATGTCAACATTATTTATTCCCCCAG
Seq C2 exon
ACTCAAATATTAAATTTGAAGGAGGAGCTGGAAAGCGAAAGGACCATTAGAGCCAAGGTGGAAAGAGAGAGAGGTGACCTCGCTCAAGACCTAGAAGATTTGAATGAGAGGCTGGAGGAGGCAGGGGGGACCAGTTTGGCTCAGATGGAGATAACTAGGCAACAGGAAGCAAGATTTCAGAAGCTTCGCCATGACATGGAAGAGACCACACGACACTTTGAGGCAACTTCTGTCTCTCTGAAAAGGAGACATGCAGAGAACGTGGCTGAGCTTGAGGGCCAGGTAGAACATTTACAGCAGGTCAGGCAAGTGCTCGATCAAGAGAAGAGTGACCTGCAGCTTCAAGTGGATGACCTCCTGACACGTGTTGATCAGATGGCCAGAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061038:ENSRNOT00000090307:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=NA C2=0.515
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(3.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]