GgaINT0119200 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90788707-90789876:-
Coord C1 exon
chr1:90789680-90789876
Coord A exon
chr1:90789057-90789679
Coord C2 exon
chr1:90788707-90789056
Length
623 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TGTCTCTTCCCATCTGGCAGAAA
3' ss Score
7.77
Exon sequences
Seq C1 exon
TCCAAAAATGCTCTGGCTCATGCCCTGCAAGCAGCCAGGCATGACTGTGATCTCTTGCGAGAACAGTACGAGGAGGAGCAAGAAGCCAAGGCAGAGCTGCAGCGGGCTCTCTCCAAGGGAAATGCAGAAGTGGCACAATGGAGAACAAAGTATGAAACTGATGCCATTCAGAGGACTGAGGAACTGGAAGATGCCAA
Seq A exon
GTAAGTGGCTTACATGGGCTTCATTTGGCACTCAGCTAAGAGGACTGTAGCATGTCTCTGAGCATCTCCAGTCGGCAGGATCTTCCCTCGCCTCCAGTACGTATTCTCCATGTAGGATTTTCACTGTGATTTGGATCCTTTCTTTCCAGGACCTCTTCTTCTTGCTGAGACTACCAAGCCTGGCTTTCCCCATCTAAATAGCCTATGACCAAAAGGTCAAGGCATGATCAGCCTCCTAATCAGAAGCTATGTCTCTTAAATGGACATTTCAGTACATGGCACTTTCATTTGACTAGGTTTTATCAAAATTCACAACCAGCCCATAGCGGTCACAGTTAAAAATCATGGCAGGCTCCTTCTTGAGAAGTCAAAAGTTCAGTTTCAAACATTCACACACATGCATAAAATTATCTCCCACTTCTAGCATTCACAATTTAAGCTATTTTTTGTCTGTGATAGTCCCTTCTCTCTAGAGGCTTGATTTTTATTTATTTTTCCTTACCTTCCCTCCCCCATTTTCCCTTTGGAAACCAAATTATTGAGATACTGCTTTGGTATCAGCTTTTCTGGATAGACAGCAGTCGTTGCCCTCAGTCATTTTGCTGTCTCTTCCCATCTGGCAG
Seq C2 exon
AAAAAAGCTTGCTGCCCGCCTGCAAGAAGCTGAGGAAGCAATTGAAGCTGCCAACGCCAAGTGCTCTTCTCTGGAAAAGACAAAGCACAGGCTGCAGAACGAGCTGGAAGATATGATGATTGATCTGGAAAAGGCCAACTCAGCGGCTGCCTCCCTGGACAAGAAGCAGCGTGGCTTTGACAAGATCATCAATGACTGGAAGCAGAAGTATGAAGAGTCACAGGCTGAGCTGGAAGCTTCCCAGAAGGAGGCCCGCAGCCTCAGCACCGAGCTCTTCAAGCTGAAGAATGCCTATGAAGAGACACTGGACCATCTGGAGACTCTGAAACGGGAAAACAAGAACCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.530 A=NA C2=0.508
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(27.1=100),PF0003816=Filament=FE(21.1=100),PF078897=DUF1664=PU(19.2=22.7)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(13.6=100),PF0003816=Filament=FE(38.9=100),PF131661=AAA_13=PD(52.9=84.7),PF078897=DUF1664=PD(79.5=52.5),PF045827=Reo_sigmaC=PU(62.8=87.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGCATGACTGTGATCTC
R:
TGATCTTGTCAAAGCCACGCT
Band lengths:
352-975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]