BtaINT0097244 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53560077-53564079:-
Coord C1 exon
chr1:53563883-53564079
Coord A exon
chr1:53560427-53563882
Coord C2 exon
chr1:53560077-53560426
Length
3456 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TTTGGGCCTCCTCTTCTCAGGAA
3' ss Score
9.58
Exon sequences
Seq C1 exon
TCACAGAGTGCCCTGGCCCAGGCCGTGAAGTCGGCCAAGCGTGATTGTGACCTTCTACGAGAGCAGTACGAGGAAGAGCAAGCAGCCAAGGCTGAGCTGCTGCAGGCCCTGCTCAAAGGCAATGCTGAAATGGTGAAGTGGAGGACCAAGTACGAGGATGACACCATCCAGCGTGCTGAGGACTTGGAGGATGCCAA
Seq A exon
GTGAGTGGGGCAGGGCTACCCTGACCCTGGAGTTAGTTATGCAGAGGACTCTGAGAATAGTGGCTTTGTCTTCAAGGCTTCACATGTGCACTTAGCAAGTCCTCACCAACTGTGTGAATAAGCCCAAGACCAAAGCTGAAACAGCCACCACTGGCAAGAAGCACATACTCTAGAGAGGTTCAAAAATTAATATTATAATACAGAGCGACAAACATTAGAGAGAAGTCCTGGGGGGAAAGGAGGTTCTTTCTAGAGATAGAAGAGAAGTCTTCACAGATGTGACTGAGCTATGGTCTGAAAACAGGCTAACATGTAAAATCCTGGGTTTCATTTGGAACACCAGAAAAATGGAGTCCACGTCTGTATACATCTCCATACATTAAAGTTATCCAAAAATGTCTCTGATCTACAACTTGTAGACTACAAAGTTGTCTGTGAAGATGGACAGGGGCAGCTGGAAATGTGTTAGGATCTGTCATCCTGTCTATGGGACAAAAGTTCCTTTGAAAAGAAATCGCCTTTGGGCCACCTCTAAGGTTAGGACATAGACAACACTACACAAAGGCTTTAGAAGTTCTTCCGGGAACTACAGAAGTTTGGGGCCTACATGAATTAAGACTTAGTCCCAGGATGTAGTTCTAAAGCTTTTTGCTCAGAGGTCAAAGAACTGTGTGTCTTTGAGAGACAGTGTCAAACCAGCCTTAAAGGTTGACTCAAAATAGTATGTCCCTGGCTTGGTAGCTTAGCAAAAATCCAGGGAAGATCAATACGTTTCTCTTTAGTATCAACCAAATATATTATTTTTCAGTTCTTCACCTAAATCTTTGAAAGACATTGCTGTACATGTGCTGAACAGCTGCTGTATTCTGTCCCTAAAGGGGGGATACCAAGAGATCTGTCTCTGTAGCCACAATAACTTAAAAAGGGCTTTGTGATGACAGATACTAAAAATACCCATGGTGAATGCGTTAAAAACTCGGGACCACAGAAAAGTGGGGCCTTGAACTGAAATGGCTCCTCATATCCAAAATATGGCATTTGCTTCTAAAGTTAAGATTTTTTTTCCCTAATTGAAGAATTCCGGTGAAAGTGTCTACCAGTCATTCTGTTTGAAGATTTCTAAGAGACAGAAAAGAGAGAAAGTATGTGGGTTACTTATGACCACATAGATTTGTTTGAACTAACAAATCATGGTCTTATAGTCGATGACAACTAGAGAGAAATGGCAAATGTGATTATATCTGAAGACTTTTTTTGTGTGTGTGTGCTTTAAACTTAAACAACAAATAAATAAAGCATTATCTCTATTATGCTTTGCCTCTAAATCCCCTCAGGGAGGTGGAATTACAAAAAAATCTAGGATTGTATTTTTTTGTTTTAAATTGGAAAGTTGAAGATCTGTCTGCTTAGATTTCCAGGCTTGGGTTAGTTTAGTGGAATCAAGCTCCCCCATGAGCCCATTTAGTGCCTCTGAGCTCTGAGTTTCCCCGAGGAAAGGGATTTGATTTCTTCTTCTCCCACATCTTCTTGCATATTCTAGGCAACCATGTAGGTGCTTATGGTTGGCAAGTTAAAGAGCAAAATGGCAGTTGGCAGTAAATGTAGAAAAACATTATCAGCCAAATGAAGGTGATCAGTTGTCCAGTTTGCCCTGGATTTGCCAGATTTGAGCCCTGATAGCCCTGTGTCCTGGCACAACCCCTCAGTCCCTCAGCAGTTGGTCACCCAAAGTAAAATTCCTGTTTTCTGGTTCCAGTTAAGCATTTCTAAACTAGTTAACATATGTGCAATTATTTTACAAGATTCTTGTTTTAAGTGGGATAGAACATCAGAATCTCCTATTTTTTATCCAGCTTTATAGAAATATGATTGACATACACCATTGTGTATGGTGTACAGTTAAGGTGTACAATATAATAATTTGAAATATGCACATGTTGTGAAATCTTTACCACAGTATGGTTGGTTAATACCTCCTTTACCCCACAGAATTACCATTTTGTTATTGTTGTTATGGTGAGAAAATTAAAGCTCTATTCTCATAGCAACACTCACATATATAATACAATATTATCAACAATAGTCACCATGCAGTACATCAGAGTCTTCTCTTAACAGTTAAGAAGAATGAAGCAAAGACATGAAGTGACTATGGCTAGAAAGCCAGTGAGCAAAGAGTAGTTGTTGGAGCCCAGGTCCTTCCTGGACACTGAGCACAGGTTGGTTTTGACAGGATTCCTAAAGGGGGCTTTATGAGCACATTGCTCTGTTGGGTTAGTTATGTGGCACATATTAATTCCTGAGGACCATTTTCTGTTTAATAACAGTAGATTGGAAAAAGCTTTGGTACATACAGTACCTTTCATGTAAGAGGTGTGATGAATGAGTAGAATGGAACTACCAGTGTCCCTGCAGGAGACATGAACAAGAGAACACATTGCATCCATTAGGGAGCATAAGAGCACTGCATTGTAAGTGTGGTGGAAGGGAAGCATTTTAATAAGCTGCTCCATCTCAGAGTATGCTGAAGGGAGGACAGACAGAGGCTAAAGTATCCCCTAACAGCAGCAGGACCTGATAAGTGAGCATACCGCTGGGATGGATGTGGGTATACACGGTGGGGAAGAGGAGCCCAGTTGGAGAAGAAATTCAGAGAAGAGAGAATCTGGGCATGTTTAAAAGTCAGATGATGAGAGGGGGAGACAGTGAGCAGGAGAGAGCTGAAGAAGGCTCTTTGCAAGCAAGGTAGCCAAGGAACTCTTTAGAGACTGCTGCTGCTGCTGCTGCTAAGTCACTTCAGTCGTGTCCGACTCTGTGTGACCCCATAGACGGCAGCCCACCAGGCTTCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCCTCTTCAATGCATGAATGTGGAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCGGACTCTTAGCGACCCCATGGACTGCAGCCTACCAGGCTTCTCTGTCCATGGGATTTTCTAGGCAAAAGTACTGGAGTGGTGTGCCATTGCCTTCTCCGCTTTAGAGACTAGATATGCCCAAAACTTTTAACAGTTGCTTACTGCTGGGTGTTCAGTACCATCTTCCTCTTATTCCCTTTTCTTGTTCTGGATAATGTCTGCATTGCTTATTTAAGGTTCCGGGAAAGCAGATACTTACAGGGATTCAGAGATTCTGAGTTTTAAGTCCAGGTTGCCAAAGGGTGGGGGAACATAAAGGACCTGTGGACACAGGAGCCAGAGGGTGGTGGTCAGCAGATATCTGGGTTCTACAGCACAAGGAGGTCTTTTTCAGACACAAGGTACTTCCCTTCATACTGTGAAACCACCCTTGGGGGCTCCCCTGTTTGCACCGCAGCGCTGTGTTTAATAAGGACACATTGGATGAGAGTTGTGGCTTCATTCCCCTTTGGGCCTCCTCTTCTCAG
Seq C2 exon
GAAGAAGCTGGCACTTCGGTTGCAGGAGGCTGCGGAAGCCATGGGGGTGGCCAATGCCAGAAACGCCTCCCTGGAGAGGGCCAGGCTCCGACTGCAGCTTGAGCTCGGGGACACCCTGTCTGATCTCGGGCAGGCGCGGTCTGCGGCTGCCGCACTCAACCAGAAGCAGCAGCATTTTGACAAGAGCCTGGACGACTGGAGGCGGAAGCACGAGGAGTCCCAGGCGATGCTGGATGCCGCAAAAAAGGAGGCCCGCGCCCTCAGCATCCAGCTCCTGGAGCTCAGGCACAGCTACGAGGAGGGCACCATGAGCCAGGAGGCCCTGCGGAGGGAGAATAAGCACCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399:ENSBTAT00000032372:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.390
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=PD(28.0=68.2)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(13.6=100),PF048997=MbeD_MobD=WD(100=46.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development