MmuINT0103629 @ mm10
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155630681-155631360:+
Coord C1 exon
chr2:155630681-155630877
Coord A exon
chr2:155630878-155631010
Coord C2 exon
chr2:155631011-155631360
Length
133 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CTGCCTGGTCTGCGGTCCAGGAA
3' ss Score
5.83
Exon sequences
Seq C1 exon
GCCAAGGGTGCGCTGGCTCATGCAGTGCAGGCCCTGCGGCACGACTGCGACCTCCTCCGAGAGCAGCACGAGGAAGAGTCTGAGGCTCAGGCTGAGCTGCAGCGGCTGCTGTCCAAAGCCAACGCGGAGGTGGCCCAGTGGCGGAGCAAGTATGAAGCAGATGCCATCCAAAGGACGGAGGAGCTGGAGGAGGCCAA
Seq A exon
GTGAGTAGCTGGCACCTAGACCACGATCCAAGGGGGACTCTGGCCTGTGCCCCCTGTGTGGTGGTGGGGATTCTGGCGTCCTTTCCCCAGGCTCCTTTGGTACATAAGCCACCCTGCCTGGTCTGCGGTCCAG
Seq C2 exon
GAAGAAGCTGGCCCTGCGGCTGCAAGAGGCAGAAGAAGGCGTAGAGGCCGCAAATGCCAAATGCTCCTCACTGGAGAAGGCCAAGCTGCGGCTGCAGACAGAGTCGGAGGATGTGACCTTGGAGCTGGAGCGGGCCACCTCGGCCGCCGCAGCCCTGGATAAGAAGCAGCGGCACTTGGAGCGGGCGCTGGAGGAGCGGAGGCGGCAGGAGGAGGAGATGCAGCGGGAACTCGAGGCGGCACAGAGGGAGGCTCGAGGTCTGGGGACAGAGCTCTTTCGACTGCGACATAGCCACGAGGAAGCGCTTGAGGCTCTGGAGACACTCAAGCGGGAGAACAAGAATCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652:ENSMUST00000092995:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=NA C2=0.669
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(28.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(13.6=100),PF0003816=Filament=PD(41.3=78.8),PF045827=Reo_sigmaC=PU(68.2=87.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGGAAGAGTCTGAGGCTC
R:
AGGTCACATCCTCCGACTCTG
Band lengths:
249-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types