RnoINT0096572 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151146900-151147590:+
Coord C1 exon
chr3:151146900-151147096
Coord A exon
chr3:151147097-151147240
Coord C2 exon
chr3:151147241-151147590
Length
144 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CTGCCCGGTCTGCGGTCCAGGAA
3' ss Score
6.07
Exon sequences
Seq C1 exon
GCCAAGGGTGCGCTGGCTCACGCAGTGCAGGCTCTGCGGCACGACTGCGACCTCCTGCGAGAGCAGCATGAGGAAGAGTCCGAGGCGCAGGCTGAGCTGCAGCGGCTGCTGTCCAAAGCCAACGCTGAGGTGGCACAGTGGAGGAGCAAGTATGAGGCGGACGCCATCCAAAGGACGGAGGAGCTGGAGGAGGCCAA
Seq A exon
GTGAGTAGCTGGCATCTTGACCACGACCCGGGAGAGGCTCGGGCCTGCGCCTGTACGCCCAGTGTGTGGTAGTGGGGACTCTGCGGTCCTTGCCCCAGGCTCCCTTGGTACATAATAGTCCACCCTGCCCGGTCTGCGGTCCAG
Seq C2 exon
GAAGAAGCTGGCCCTGAGGCTGCAGGAGGCAGAAGAAGGCGTAGAGGCTGCGAATGCCAAGTGCTCCTCACTGGAGAAGGCCAAGCTGCGGCTGCAGACAGAGTCCGAGGACGTGACCTTGGAGCTGGAGCGGGCCACCTCAGCCGCTGCTGCACTGGATAAGAAGCAGCGGCACTTGGAGCGGGCCCTGGAGGAACGGAGGCGGCAGGAGGAGGAGATGCAGCGGGAACTGGAGGCGGCGCAGAGGGAGGCTCGAGGTCTGGGCACCGAGCTCTTTCGATTGCGGCACAGCCATGAGGAGGCGCTTGAGGCTCTGGAGACACTCAAGCGGGAGAACAAGAATCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.439 A=NA C2=0.669
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(27.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(13.6=100),PF0003816=Filament=PD(39.7=78.8),PF045827=Reo_sigmaC=PU(67.8=85.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGTGGAGGAGCAAGTAT
R:
AAGTGCCGCTGCTTCTTATCC
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]