GgaINT1031191 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr20:2945948-2946661:-
Coord C1 exon
chr20:2946465-2946661
Coord A exon
chr20:2946298-2946464
Coord C2 exon
chr20:2945948-2946297
Length
167 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CTCCTTGCTGCTGTCTGCAGGAA
3' ss Score
9.92
Exon sequences
Seq C1 exon
AGCAAGAACGCCCTGGCACATGCCCTGCAAGCTTCTCGCCATGACTGCGACCTGCTGCGGGAGCAGTATGAGGAGGAGGTGGAGGCCAAGAGTGAGCTCCAGAGGAACTTGTCCAAGGCCAATGCCGAGGTGGCCCAGTGGAGAACCAAATACGAAACAGATGCTATCCAGAGAACAGAGGAGCTGGAGGAAGCCAA
Seq A exon
GTGAGTCTCATGCCAGGATTAGGTTACTTGTGGGTGGCAGGTTTCTATTTAAGGATGAGGCCCTCTCAAATCCGAGGCTTTCTGGGCAGGCCAAGGCCTTCCCTGCAGAGCTGCAGGTGGGCTGGCACTTGAGCTGGAAGCTGCTTACTCCTTGCTGCTGTCTGCAG
Seq C2 exon
GAAGAAGCTGGCCATTCGGCTGCAGGAAGCGGAAGAGGCTGTGGAGGCTGCCCATGCCAAGTGCTCCTCACTGGAGAAGACCAAGCACAGGCTGCAGACAGAGATCGAGGACCTCTCAGTGGACCTGGAGAGAGCCAACTCTGCCTGTGCTGCCCTGGACAAGAAGCAGCGCAACTTTGACAGGATCCTGGCTGAGTGGAAGCAGAAGTATGAGGAAACTCAGGCAGAGCTGGAGGCATCACAGAAAGAGTCACGCAGCCTGAGCACGGAACTCTTCAAGCTCAAGAACGCCTATGAGGAGTCTCTGGACAACCTGGAGACCCTCAAGAGGGAGAACAAGAACCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCAGTATGAGGAGGAGG
R:
AGGTCCTCGATCTCTGTCTGC
Band lengths:
253-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]