BtaINT0097375 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64909074-64909726:+
Coord C1 exon
chr13:64909074-64909270
Coord A exon
chr13:64909271-64909376
Coord C2 exon
chr13:64909377-64909726
Length
106 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CATCTGTTCCCGGGGCCCAGAAA
3' ss Score
3.27
Exon sequences
Seq C1 exon
GCCAAGAGCGCGCTGGCTCATGCAGTGCAGGCTCTGCGGCATGACTGTGACCTCCTGAGGGAGCAGCATGAGGAGGAGGCTGAGGCCCAGGCCGAGCTGCAGAGGCTGCTGTCCAAGGCCAATGCCGAGGTGGCCCAGTGGAGGAGCAAGTACGAGGCAGATGCCATCCAGAGGACCGAGGAACTGGAGGAGGCCAA
Seq A exon
GTGAGTGCCCTGCCGGCCTGGCCAGCACCGCCTCGGGGCGGGGTAGGGTGGGGGAGGATGCGGGGCTCAGCTACACTCCTACATCCCATCTGTTCCCGGGGCCCAG
Seq C2 exon
AAAGAAGCTGGCGCTGCGACTGCAGGAGGCAGAGGAGGGGGTTGAGGCCGCTCACGCCAAGTGCTCGTCGCTGGAGAAGGCCAAGCTGCGGCTGCAGACCGAGTCAGAGGACGTGACCCTGGAGCTGGAGCGGGCAACCTCTGCGGCCGCGGCGCTGGACAAGAAGCAGCGGCACTTGGAGCGGGCGCTGGAGGAGCGGCGGCGGCAGGAGGAGGAGATGCAGCGGGAGCTGGAGGCGGCCCAGAGGGAGGCCCGCAGCCTGGGCACTGAGCTCTTCCGGCTGCGGCACAGCCATGAGGAGGCCCTGGAGGCCCTGGAGACGCTCAGGCGGGAGAACAAGAACCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=NA C2=0.678
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(23.7=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(13.6=100),PF0003816=Filament=PD(33.9=78.8),PF045827=Reo_sigmaC=PU(74.3=88.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATGAGGAGGAGGCTGAG
R:
CAGGGTCACGTCCTCTGACTC
Band lengths:
254-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development