DreINT0099894 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24953015-24955584:-
Coord C1 exon
chr11:24955388-24955584
Coord A exon
chr11:24953365-24955387
Coord C2 exon
chr11:24953015-24953364
Length
2023 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TAAATTGTTTAACTCATCAGGAA
3' ss Score
4.73
Exon sequences
Seq C1 exon
TCAAAGAATGCTTTGACTCATGCCCTACAATCCTCCAGACATGACTGTGATCTGCTGAGAGAGCAATATGACGAAGAACAAGAGGGTAAATCTGAGCTTCAGCGCGCACTGTCCAAAGCTAATGCTGAGGTTGCCCAGTGGAGGACCAAATATGAGACAGACGCCATTCAGAAGACAGAGGAACTCGAAGAAGCAAA
Seq A exon
GTGAGTGCCGGATTAAACAGTAGGTATCAGATTTTCATGTCGCAATAATTTGCTGAAGCTTTTATCATGGTTTATGGTATTATCACAATACAATATTGATTTAAGCTGCAAAATGTTACATTAACAAGAATTATAACAAAAACAAAATTGCCGTATTGCTTTGTTGTTTACATTTTCAGAGTAAGCAACTGTTATAAGCAAATTAAAGTAAAGAAGGATTATAAAGTACAATAGGCAGGGTTTCTGTAGGTTTCAGCAAGTTTAAGACTTTTAAAGACATTTTAGGATCTTGAAAATGAAATTTTAGACTCATACAGTGCTAAACACCAAGGAGTTTTTTGAATGGCTCAGTTGGAAATGTTTTTTTTTTTTTTGCTGTATAAACTTTTTAAAATAATTTAATAATACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAATAATATTTTAGTTTATTCTGAGCAAAATATTTTAAATATTGTCTCAAAACAAGCAAGCTCTAGTTCTATATATACATTTTTTTCAAAATAAACTTTCTTAAAATAAGCAGTAAATACATGTAGAACTTTTAAACATATGTTATTGTAAAGAAAATAATGAAACCACTATAGTAAATGGAGTTAAAAATTACATTAAATATAAAGTTTAAAGTTTTATTGAGATGGATTGTTGGTAATTGTATGGATGTTAATGGCCAGATTGTGTTGCTATACATGAACAAAGGAATATCAAGACCTTTTAAAAAAAAGACCTACAACACAATATTTCAGTAAATGTAAGACTTTTTAATGCCTAAAGTTTTGTTTTTGAGATTTAAGACATTTTAAGACTTTTTAAGACCCCGCAGATACCCTGAACAGGTAACAATTTGTCATGTAGTCATGATTATGAACTTGTAATCAGATTAAACCATGACTTAAACCAGGGGTCACCAATCTTGGTCCTGGAGGGCCGGTGTCCCTGCAGGATTTAGCTTCAACTTGCTTCAACACACCTGTCTGCGTGTTTCAAGTATACCTAGTAAGACCTTGATTAGCTTGTTCAGGTGTGTTTAATTAAGCTTGGGGCTAAAAACTGCAGGATACCGGCCCTCCACGAAAAAGTTTGGTGACCACTGACTTTAATACATTGACTAAGAAATTAACATCACATAAGATTAATAAATGGTTTGTAATATTTTTGTGAGGTTAAATTAACTTCTTTTAACTATTGGAGCCTTTTTTCACATTGTTCACATTCAATTATGGCACGACAACTGGTTTCAAGGTTTACCACGGTAAGGAAAAGTCAAGGTTTTAAAACCGCTAAAAGTGTCTTCCCTCATATGTGAGTTTTTTTTTTGTTACAGGTTTTATTATGACCATCTCATTTAGTTTTTTAGGGCAACAGTATATCTCCAGCAGAAAAGAACCATATCAAAAGCTACTGGCCAAAGAAATGTGTTTTTGAATATAACAAAGACAGCAGAAGACAATTATTTATTTTAGTTATTTAGCCTAACATGTTTATTGCTTTAAAATACTATAAATGTTTCCGAAAAAAAAAATTTGTATTTATTGGGTTTTTTTACACACCCTCTTATTTTTGAGCAGTAATTACAACATCATAATATCGTGACATTTTTATCCAAGGTTATCATACCGTCAGAACCTTATACTGGTCCATGCCTACATTCAATATCTATATAAATGATTACAGAACTTTTAACCAATATTTCAGCATGTAGTAGGCCAGATTAACATAGGGAAATCTTCATCATTTGAACTTTTAAGCTAATTAACCAATTAAGTCTTTAAGCATCTGGCTCTGAAACTCACTGCAATCTGAATATTATTAAGAGGCATACCAAAGGATTAAATGGTAAATTGTTATTCACAGTATCTTGAAGTGCCCACAATATCAATATAACCCATGTTTATTATCACAATATATTGAATCATTGAATTGCAGCTTATAAATGAATTGCGTTGTGGTTCAAACTACAAATCATTAAATTGTTTAACTCATCAG
Seq C2 exon
GAAGAAGTTGGCCACACGCCTCCAAGAGTCTGAGGAACAAGTTGAAGCCTCAAACGCCAAGTGTTCCTCATTAGAAAAGACCAAACATCGGCTGCAGTCTGAGATTGAGGATCTGGTATTAGATCTGGAGCGCTCGAACGCTGCCGCCACTGCACTGGACAAGAAGCAGAGGCAATTTGACAAGATTCTGGCTGAATGGAGGCATAAGTACGAGGAGTGCCAGTCTGAGCTGGAATCATCTCAGAAAGAGTCTCGTAATCTGAGCACGGAGCTGTTCAAACTCAAGAACTCATACGAGGAGGCTCTCGACCATCTGGAAAGCATCAAACGGGAGAGTAAAAATCTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.712 A=NA C2=0.424
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.6=100),PF059116=DUF869=PD(13.7=31.8),PF0003816=Filament=PD(42.7=80.3)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(13.6=100),PF045827=Reo_sigmaC=PU(71.7=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]