GgaINT0120683 @ galGal3
Intron Retention
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13675574-13677102:+
Coord C1 exon
chr1:13675574-13675610
Coord A exon
chr1:13675611-13677042
Coord C2 exon
chr1:13677043-13677102
Length
1432 bp
Sequences
Splice sites
5' ss Seq
GATGTAGGC
5' ss Score
2.52
3' ss Seq
TTGCTCTGTTTATTTCAGAGGAA
3' ss Score
0.07
Exon sequences
Seq C1 exon
GATGCTTGGGACTCTGGTAAGTAAAACTTTTGTTGAT
Seq A exon
GTAGGCCTTAGCCCTAGTGTTTGTTAGGATATTTCCATCAAGCTGTTGTCAGCTAAAGTAAATAGTGTGTGTTGCCAGCATTGAAGAGTTTGAGGCATTAGTATGAGCAGCTGTTAAATTGACACTACTATAAAGTTTTCCTGTAAGGTTGCATACTGGCTAGAAAACCTTTGAAAATGAGGTTCTTCTTTCATAGTGGATCTAGCTTGATAGAAGCAGTAAGCCCTTGTTTGCTTAAGAATTTCTTCTCCAGGATTTTTCTGAGAGTATCAGTGACACGATGTTACTGTTGTATCTTGCCCACTTAGAGCTGCCTTCACAAATATGGAATTTGTGTATGGTAGGAGAGCATGGCTGGTGACACCAGCCACTGTGAAGGATGGAAGTATGTAATGGACTTGCCTAGGCCAGGAACACCTGAGATTATAAGTGGTGTTCAGTTTCTCTGTCACAAATGAGAAAAACTAAATTTAGTGGTAAATTATGTTCCTGTTCATCCATCAGTGCCTTCTATGTGATCTGTTACTGTGTGCTGTGCAGTCATACTGATCTAAGTGTTGATCACATATTTTGTTACAAAGACTTTTCAGTGTGTTCACTGCCAGCCCCTAGCATTTGTCATTTGTGCTGCTGCTGGTTGTTGCAGTGGGCTCTGATTTTTAGGGCCCTGCATCAACTTTAGTTGCCTCATGTTGAAACTACTGGCATGTTTTCCTAAGGTGCATATTGATAAGGATGTTCAGCTGTTTCTAAAGAATTTCTAGGTAGCTGCCAACAAGTAATAAGCATCAATGTAGTGCCTCTTGCATGTAGATCTTCCTTCAGAAAGAACTGATTAGGAAATACAGAGTATTAAATTACAGTAGTTGTTATAATCTGCTTCCGTGTAGTTGAAGGGTTGTGTTCCTTAATGGTCTGCAAATCTGAGTAACAAAAGCAACTGTGGGAGAGAACCAGGCAAGCGAGAGCTGATACTGTGGTGTTTCTACTTTGTGTCTATCCATTTCCTTAGAAAACCCATGCAGCTCTTTTGCCTTTTATTAGTAAATAACAAGGTCTGAACAATAAATGCATTTGCACTGTGTGGGTGGGAGATTCTCTTAGTATTCCTCCTCTACCAAATCACCACAGTACGATACATCTCCCTTAAATATCAAAGAAAAGAGTAATGAAAATAAAGTGTAAAACAGTTTGACAGTTTGTGTTCCTCCGTGCTCAGTGTTAAGTGTAAAGATGGCAAATAAGGGGTTAAGTTCCATTCCTTGGTTCTCTCTTATGAAGTCCTCGATTCTGTCATTGTGTTAGTTCTGTATGTGAGTAGATATGTTAACAGAAGGTGGAGATCTGTGTTTCTCAGTATGTTTGAAGTGGTTTGGAGTTTTGTCATACAGTGTCATGCCCTTGAATGACTGTTGCTCTGTTTATTTCAGAG
Seq C2 exon
GAAAGGCTCGTACCTCTCTTTCAAGAGGAAGACTATCAGCAGCAATTACTAATGGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312:ENSGALT00000013530:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF042697=DUF440=FE(13.2=100)
A:
NA
C2:
PF042697=DUF440=FE(20.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]