BtaINT0112016 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018430 | PION
Description
Bos taurus pigeon homolog (Drosophila) (PION), mRNA. [Source:RefSeq mRNA;Acc:NM_001193061]
Coordinates
chr4:44127746-44129559:+
Coord C1 exon
chr4:44127746-44127777
Coord A exon
chr4:44127778-44129497
Coord C2 exon
chr4:44129498-44129559
Length
1720 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
ATCGCTCTGTTTAATTTCAGAGC
3' ss Score
8.58
Exon sequences
Seq C1 exon
GGTGATTTCTAACGTAGAAGCAAAGAATTTGG
Seq A exon
GTAAGAAAAGACCTATAACAAAGTCTTCTGATTTCAGTCAGTTGTTTGTTTGTAACACCATTCTCCCACTGTGGGTTGGCAGGGAAGTCACTTCCACTAGCTCAGTGAAGGCAGCACCCTTTACTATCTTCCTGTCAGAGCGACTCCCAGTTTCTTCCATGTCTCTCTTGGCACCAGGTCCTTTGGGAACAGCTGCTGAATGTGCTTTTGCTGTAGGACTCCCTGACTGTAGGTTTTCCTCCTATTTCCCTGTAGAACTGATCTAATTAACATGCTCGCTGGGTGTACTTCCCTTGGCCTAGAGTTGTTCTCTCTCCAGCTATCTATCTGTGGGACTCTTTCACACCTCTTAAAGGTCAGCCTCACTTTTTTTTTTTTTAAGCTGTTATTTTTATGTTGTTTTATAGGCTTGGATGTTTAGTTATATGCTGGGTGACCCTAATGGAAATTATTTTATAACGGTGCTTTGCTGCACATCCTGCAGCTGTGCACACAGCCCACGTGAGCAGTGAAGTCACTTAGCAGCCCTGGGGGAACAGGTCGTCCCGGCCTGAAGCCAGGGTTCTGCCACCAACCCCAGGCAGGAGCCAGGGGTTGTGAGCATGCTTGCAGGCTCCCCTTCTTGCATCACTCGGGGATTTGTAGTATGGGAAGTGTGACTGGTCTGGCTGAGGTTTCTGTGTCCTCTGTTCCCACGTCTGGTTAGAGCTCCTTCCGCTCCTGAGCTTCAGGGCTGTTTGCATCTGTTACTAGTCATTCTCTCTTGATGCACTTTAGGGAACTCGCTGCTTCCTCTCACATTCTTTGTTTGTGCTAGTTTCCTAGGAAGAAAGTCACTGTCAGAAGCGAACATTCTTTGTGAAATGCGGAACAACCATGAAAACTGCTGGGCTCTAGTTTTGAAGTTTTCATCATGAAGGTTGTGTAGGATCCAGTTAGGATTTATCCCAAGTGGTCAAGAAGCATCTGTGCCCTCCTGAAAGGAGTCCTCAGCTCCCTGACCAGGGCAATTCTACCTCTTGACCAGCACTGTGACTCAGGTTCTGGCAGAGGAAGATGGGGCATGAAGGTGCTCTAGGAGATCTTCCTAGAGACAGCGTTTGCCTGCCCCTCCAGTCCTGTTGGCACAGTGCAAATCATGGTGGATAAAGTGCCATTTGGTTTAACCTTACACGCCACTTTTCCATCTCAGTCTAACTACATTTTCAGTCCTATAATGTGCCAGTTATTATTTGCCTCAGTAATTGACTGCGGTGACTGGTCCCCTCACCTCAGTAATTCTATAAACTACAAGTTGGAGTCAGAAAGAAGGGAGTCACGTGATCCTTCCACTCAGTCCCTGTTCCTGGGTTTGCCACTCCTTAGGTTAAGAGAGGACCTGAGTTGTTTAGTCTCCTGTGAAGCAGAGGATCTCAGTGACAAGTCTCCACATTGAAGAGAAATTGAAGCCAGAGGGTATTGGTGTTGGCAATGTGTTCCTTGTGTTCTCTCTCTCTTTCAGTCTGCGCCTCTCTCTGTTTCACAGTGCTCCCTGCGTATTACCTGAGTGATAAGTTGCAGTGTGTAGGGCAAGGTCACACTGAAAGAGAAGTTTTCATCCCGTCAGGAAAGTGTTATAATTTCCCCAATGACTCAGAGAAGGGAAGCCCAGACTGAGGCCTCTTCCTTCTGGTCATTTCCTAAAAACACCCTGCTTGACTATCGCTCTGTTTAATTTCAG
Seq C2 exon
AGCCAAGATTAACACCCCTCTTCCAGGAGGAAGACACCCACCAGCAGCTGCTTATCGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018430:ENSBTAT00000024520:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]