MmuINT0120078 @ mm10
Intron Retention
Gene
ENSMUSG00000039934 | Gsap
Description
gamma-secretase activating protein [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:21271217-21273043:+
Coord C1 exon
chr5:21271217-21271248
Coord A exon
chr5:21271249-21272981
Coord C2 exon
chr5:21272982-21273043
Length
1733 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CCTTGACTGTTCAATTTCAGAGC
3' ss Score
8.7
Exon sequences
Seq C1 exon
GGTGATTGCTAGCATGGAAACGAGGACACTGG
Seq A exon
GTAAGAAAAGACCTGTGTTAAAGTCGGATCTCGGTCGCAACCTTGTTCTTCCTAACCAATGGGTTGGCAAGAAAATCATTCCCAGCAGTACAGTGGAGAGTAGTGGATGGCAACAGCTCTTAGTTCACCCTGTCAGGACGACCACATAGCTCTGTTACTGTCTGTCTTAGCACTGGGACCTCCAGGGTCAGCAGCCAAGTATGTTTTTGCTGAAGGAGTCTCTGGGTCTTCTCCTCTCACAGCTGATCTAATTAGCATGGCTGCTGGCTGTACCCACAGGGTATACTTGGCAGGAGCTGCTTTCTCTCCAGCTGTGCTCACACAAGTCTCTGATGGGCCTTCTATTTAGTTCCCATCAGGTCATACCCTGGGTGTGGTCCTAGGGGAGCAAAGATGGGCCATTGGATAAGCAGTATCGTTCAGTGGCGTGGACACCTCCTTAGAGTCTAGAGCTAGCTGTCACATGCCAACCATAAGCTAGCTGTCACATGCCAACATTGTCCTTGGGGCTAGCTTGAGGGGAGAGTATGGACAGAAGGAGCCATTAGAGAATATGTAGTCAGGGTCTAGTGTGTAGGGGACAAGAGGCCTAGGCCAGACCCCTCCCCTTCGTGGAGGATAGAGGGAGTCTCGGGAGGCCTTCCAAGGCCAGGATTAGCTAAATTAAGTCTTGACAGCAAGGAGGGTTTACTCTGTGATAACTGAGGGAGAACAGTGAATATACCCAGGTCCAGGCCTTTGTGATTATGCTTCATGAAGGCCAGTCTTCATTATGGAAACTGTTTTTATCTACTCCTGTTTTATGGGCTTGGATGTTTTTCATATGTGTGGGGACCCTAATGAAAATTTAATTTGGAAAGGGCATAACAGCATGCTCAGCAGCTGTATACACAGCCCAGTGAACCATGAAGGTGATTTATCTCCACGGGGAACTGGCCTCAGCCTGAAGAGGGTGTGTTTACCAGACCATCCTTGCCTGTAGGCAGGGACTATACCCTACCAGACAGGGTCATCTTCCTGCTGTGGCTGACAGTTGTGGGAGGTTTTCTTGCTGCCTAGGGGATGTTTCGAAGCTCTGTGTGGCGCTAGGCATCTCAGGGCTCGTTAAAACTTTTCCTTTCTGTCTTGTGCTTTGATTCCCATGAGGAATGTTGTCATTGCCTAAAACTGAACACTGCAAATTAAGGTTGTTAAATGCATATTCTGAGTTCTCCCATCCTAATCCACAGGGTTAATTAAACAGGGTGGAGAAAGTGTTTATCTTGAAGGGCCTTAGAGCACCCATGCCTTTTCAAGAGGAAGCATCAGCCTGTGGGTTCTGCCTTCCTACCTGCTCCGGGACCTTAGAGATTCTGAGAGAAGAACCCAGTGGGACAGTTGTTAGGGGAGCTCTGGGAAGCCCTGCCTGCTAGCCTGCCCCTTCTGTCTTGTTAGGGCAGGATCAGTCAGAGTGGGGAAAGTGACATTTGGTTTAACTGTTTGTCCTTTCAGTCTGATGACTTGTACCCATCAGCACTGTCTTCCCTAGCAGTTGACTGTCCACCAGCTCAGTCGCTTTCATGGCCACTCACTATGGGCTCAGGAGGTAGAAGGGAGCCACATAGCCATACCCCGAGGCCTGCCATCCCTACGGCTAGGCCCCTTGAGGTTTAAGGGGCTCAAGTCGAGAACTGGCTTGTATGGCTTTAGCCTACTTCCTGAACACAACCCTTCCCTTGACTGTTCAATTTCAG
Seq C2 exon
AGCCAAGATTAATACCATTCTTACAAGAGGAAGACCGGCACCAGAGGCTGCTCATGGGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934:ENSMUST00000036031:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types