RnoINT0068000 @ rn6
Intron Retention
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10437864-10439735:-
Coord C1 exon
chr4:10439704-10439735
Coord A exon
chr4:10437926-10439703
Coord C2 exon
chr4:10437864-10437925
Length
1778 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
GCTCCTCTGTTCAATTTCAGAGC
3' ss Score
9.78
Exon sequences
Seq C1 exon
GGTGATTTCTAACATGGAAATGAAAACATTCG
Seq A exon
GTAAGAAAGACCTGTGTTAAAGTCCGTGCTTTGCTTGTAACATTTTTCTTCCTAACCAATGGGTTGGCAAGAAAATCACTCCCAGCCACATAATAGGGTGCCATGGATAGCAAACGCTCTTAATATCACCCTGTCACAGTTGCTACATACCATTTCAATATCTGTCTTAGTATCAGGACCTCCAGGGTGAGCCTCTGAGTGTGTTTGCTGATGGAGTCTTCTGGTTTTCCCACTTCTCCTCTCAGCGCTGATCTCTTAGCCTGGCCCCTGGCTGTATCCACCGGGTGCACTTGGTGTTCTCTTGCAGGAGCTGCTGCTTCTCCAGCTGTCTCATTGCATAGAGACTTTGACTTACATGTCCCATCCATTTGGTTCACATCAGGTCTTAACCCTGGGCTTGGTCCCAGGGGAGCAAAGATGGGTCATTGGATAAGCAGTGTGGTTCTGTGGGTGGACACCATCTTGGAGTCTAGAGCCAGCTGCCACATGCCAACCATAAGCGCCTGAACCTTGTCCTTGGGGCTAGCTAGCATGAGGGGAAAGGACAGAGTCCATTAGAGAATACCTAGTCAGTGTCTAGTGTAGGGAACAAGGGGTGTAGGCTGGACCCCTTCCCTTGATGGAGGAGAGAGGGAGTCTTGGGAGGTTTAAGTCTCCACAGGCAAGGAGGTTTACTCTGTGATAATGGAGGGAGAACAGTGAATATACCCAGGCCCAGGCCTTGGCGATATTGATCATGCTTCATGAAGGCTGGCCTCAGGAAACTGTTTTTATCTACTCCTGTCTTATGGGCTTGGATGTTTTTCATACGTGTGGGGACCGTAACGAACATTTAACTTGGAAATGGTGTAGCAGCAAGCCTAACAGCTGTATACACAGCCCAGTGAACCGTGAAGGTGGCTTTTCTCTACAGGGAACTGACCTCAGCCTGAAGAGACCATCCTTGCCTATAACCAGGGACTATACCCTACCAGACAGGGCATAATGTGTGAGATCCAAGGTCATCTTCCTGCTGTGGCTGAAAGCTGTGTAGTATGGGCGGCTTTCTTGCTGTCCAGGGGAGGTTTCGAGGCTCTCCGTAGTGCCAGGCCTGCCAGCATCTTGCCGGGCAGTGACTCAGTGCTCTTTAAAACTTTTCCTTTCTGTCTTGTGCTTTTCTTCCTGAGAGGAAAGCTGTCATTGCCTAAAACATTGCAAATTAAGGTCTTTAAATGCGTATTCTGAGTTATTTCATCATTATCCAGAGGGCTAATTGAGGAGGGTGGAGAAAGTGTTTATCCTGAGGGGCCATAGAGCACCCATGCCTTTTTGGGAGAAAACATCAGCCTGTGGGTTCTGTCCTCATACCTGCTCTGTGGTCTTAGAGATTCTGAGAGAAGAACCCAATAGGACAGTTGTTAGGGGAGACCTGGGGAAGCCCTGCCTGCCAGCCTGCCTGTCTGTCTTGTTAGGCAGGGTCAGTCAGAGTGGGGAAAGTGACATTTGGCTTAACTCTCACAGTTTGTCCTTTCAGTCTGATGACTTGTGCCCATCAGCCCTGTCTGCTCAGCACTGTCTGTCCCAGTGGCTGACTGTCCGTCTGCTCAGGGGCTGTCACAGCCACTACACTATGGGCTCCGGAGGTAGAAGGGAGTCACATGGCTCTACTACGGAGGCCTGGCATCCCTACAGCTAGGCCTCTTAGGGTTAAGGGGCTCAAGTCAAGAACTGGCTGGTGTGGTTCTAGCCCACTTCCTGACCACTACCCTCCCCATGACTGCTCCTCTGTTCAATTTCAG
Seq C2 exon
AGCCAAGGTTAATACCCCTCTTACAAGAGGAAGACAGGCACCAGAGGCTGCTCATGGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801:ENSRNOT00000039953:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]