GgaINT0123748 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7576010-7576493:-
Coord C1 exon
chr17:7576405-7576493
Coord A exon
chr17:7576085-7576404
Coord C2 exon
chr17:7576010-7576084
Length
320 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
GGAAATACAATTTCTTTCAGGTC
3' ss Score
5.5
Exon sequences
Seq C1 exon
GTGAAGACTTTAAAACAGTTCAGAAGGAAGTCGCTGATATCTTGAATGGAAGGATTTTAGTTGGGCATGCATTACACAATGACCTAAAG
Seq A exon
GTAATATGGCTGCAGATTTGTTACTTTGAAGACAAAGCTCCAAACACTGAAAATTAATGAATATATAATTTATCTTCCTGGACCAGTCAGGTAACACACCTGTACTCCCAGAAACGACTGCTTTTTAACTGTTCACTTAGTTTCTTGTCTTCTCACACTGTACCAAGTGTAGCCCTGTGTACTGGCACACCAAGTTCTTCAGCTTCCACACTGATCTTAACAGCACTGATTTGGATACTGAAGAGCAGGAAGCTGTACATTCAGCTATATAAATTTTAATGTAGCAGCACTCTTTACACTGGAAATACAATTTCTTTCAG
Seq C2 exon
GTCCTATTTCTTGATCATCCTAAGAAGAAAATACGTGACACACAAAAATACAAACCTTTCAGACAGAGAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003166:ENSGALT00000005016:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(19.2=100)
A:
NA
C2:
PF0092919=RNase_T=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]