BtaINT0124205 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019721 | REXO4
Description
REX4, RNA exonuclease 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr11:104360997-104362172:-
Coord C1 exon
chr11:104362084-104362172
Coord A exon
chr11:104361072-104362083
Coord C2 exon
chr11:104360997-104361071
Length
1012 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCG
5' ss Score
5.74
3' ss Seq
GTCGGGCCTGCCTTCTCCAGGCG
3' ss Score
7.88
Exon sequences
Seq C1 exon
GAGAAGAGTTTGAAGTTGTTCAGAGGGAAGTCGCGGAGCTGCTCAAGGGCCGGATTCTGGTCGGACACGCGCTGCACAACGACCTCAAG
Seq A exon
GTGCCGGCCGCGCCTGTGTGCCCCGCGGCGTCGGGGGTGCCCCACGTGCGCGCGCCTGTGTGCCCCGCGGCGTCGGGGGTGCCCCACGTGCGCGCGCCTCTGTGTCCCGCGGCGTCGGGGGTGCCCCGCGTGCGCGCGCCTCTGTGCCCTGCGGCGTCGGGGGTGCCGGCCGCGCCTCTGTGTCCCGCGGCGTCGGGGGTGCCCCGCGTGCGCCTGTGTGTCCCGCGGCGTCGGGGGTGCCCCGCGTGCGCGCACCTCTGTGTCCCGCAGCGTCGGGGGTGTCGGCCCACGCCTCCTGATGTGGGTGATGCGCCCGCAGGGAGAGCCGGGGCAGGGGGCGGCTCCTCACGCACCCGGGTAGACGGAGCCACGGCTGACGCTGCCTCCCCGCCCAGCGATGGCCCCACTCCTCAGGGCAGAGCCCCCTCCCCGGGCGGGGGCACCCCCAGTGCCTGTTACCTCGAAACCCCGGGCAGGCCATCTCACAGGCTGGCCCCTGAAGGCCAGCACGCCGGGTGGCAGGCCAGCTCCGAGGGCCCCTTCCTGTGTTCCCGAGGGTGGGGCTCGGCCTGTGCCCGCTAGGGTCTCTGCCCCGGGCTGCACTGGCTTGCCTCAGGCTCCCCCTTCAGCCCCTGTGCCCTCCCCACCCTGGTAACCTGGGCAGACTTGCCTTCCACCTTCTCCTGGGCCTGTCTCAAGGTCATGGGGGGGACCCGTTTCATCCCCGACATCCTGTGTGTATATGTGTGTGTGTGTGATACAAACTCAAGTACGGGACAAATGGTCGCTGGTTCCTTCGTGACTGAGTCTCCACCTTCCCCGCTTTTAAGGCTGTGTTTCTGTCCACGAGTTCTTCCTGCTGAGCATCACCTGTCCCGCGATAATCGCCCCTGGAGGTTCAGGCTCTCATCAGTGCCTTGTCCTGTCTGCATGCTCGGTATGGGATTCTGAGAAGGGGGTGCACCTTTCTGCAGACAGACACCAGAACGCCTGTCGGGCCTGCCTTCTCCAG
Seq C2 exon
GCGCTGTTTCTGGGCCACCCGAAGAAGAAGATCCGGGACACTCAGAAGTACAAGCCTTTCAGGACCCAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019721:ENSBTAT00000026283:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.280
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(19.2=100)
A:
NA
C2:
PF0092919=RNase_T=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development