GgaINT1023597 @ galGal4
Intron Retention
Gene
ENSGALG00000003166 | REXO4
Description
REX4 homolog, 3'-5' exonuclease [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr17:6903605-6904087:-
Coord C1 exon
chr17:6903999-6904087
Coord A exon
chr17:6903680-6903998
Coord C2 exon
chr17:6903605-6903679
Length
319 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
GGAAATACAATTTCTTTCAGGTC
3' ss Score
5.5
Exon sequences
Seq C1 exon
GTGAAGACTTTAAAACAGTTCAGAAGGAAGTCGCTGATATCTTGAATGGAAGGATTTTAGTTGGGCATGCATTACACAATGACCTAAAG
Seq A exon
GTAATATGGCTGCAGATTTGTTACTTTGAAGACAAAGCTCCAAACACTGAAAATTAATGAATCTATAATTTATCTTCCTGGACCAGTCAGGTAACACACCTGAACTCCCAGAAACGACTGCTCTTTAACTGTTCACTTAGTTTCTTGTCTTCTCACACTGTACCAAGTGTAGCCCTGGTACTGGCACACCAAGTTCTTCAGCTTCCACACTGATCTTAACAGCACTGATTTGGATACTGAAGAGCAGGAAGCTGTACATTCAGCTATATAAATTTTTGTGTAGCAGCACTCTTTATACTGGAAATACAATTTCTTTCAG
Seq C2 exon
GTCCTATTTCTTGATCATCCTAAGAAGAAAATACGTGACACACAAAAATACAAACCTTTCAGACAGAGAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003166:ENSGALT00000005016:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(19.2=100)
A:
NA
C2:
PF0092919=RNase_T=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]