DreINT0018027 @ danRer10
Intron Retention
Gene
ENSDARG00000088619 | REXO4
Description
REX4, RNA exonuclease 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr21:5828900-5830052:+
Coord C1 exon
chr21:5828900-5828988
Coord A exon
chr21:5828989-5829977
Coord C2 exon
chr21:5829978-5830052
Length
989 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
CCCCTTTGTCTCGTTTTTAGATT
3' ss Score
11.79
Exon sequences
Seq C1 exon
GCGAGGACATCAAAACAGTGCAGAAGGAAGTGGCTCAGATTCTGAAAGGAAGGATTTTAGTGGGACACGCCATTCATAATGATTTAAAG
Seq A exon
GTACAGTACACTTCGTGTCAGAATCATAAGTCAATTAAAATAGTTCCTATGACTAACTTTGTTTTGGTTTAGTTTGTTTTTGTTTGAATGTTCAGAGTTGGTGAACTTTTAATATACACTCACCGGCCACGTTATGAGGTACACCTGTCCAAATTTCTAATCAGCCAATCACATGGCAGTAATGCATGTAGAAGTGGTCAAGACGATCTGCTGCAGTTCATACCGAGCATCAGAATGGGGTAGAAAGGGGATTTATGTGACTTTTAATTTTGTTGGTGCTTGATGGGCTGGTCTGAGTATTTCAGAAACTGCTGATCTACTGGGATTTTTACGCACAAGCATCTCTAGGGTTTACAGAGAATGATAAGAAAAAGAGAAAATATCAAGTGAGCGGCAGTTCTGTGGGCGCAAATGCCTTGTTGATGCCAGAGGTCAGAGGAGAATGGCCAGACTGGTTCCAGCTGATAGAAAGGCAACAGTAACTCAAATAACGACTCACTACAACCAAGGTCTGCAGGAGAGCATCTCTGAACACACAACAAGACAAACCTTGAGGCAGATGGACTACAGCAGCAGAAGACCACACCGGGTGCCACTTCTGTCAGCTAAGTACAGGAAACTGAGGCTACAATTCACACAGGCTCACCAAAATTGGACAATTGAAGATTGGGAAAACGTTGCCTGGTCTGATGAGTCTCCATTTCTGCTGAGACATTTGGATGGAAGGGTCAGAATTTGGCATAATCAACATTAAAGCGTGGATCCAACCTGCCTTGTATCAACGGTTCAGGCTGATTATGGTGATGTAATGGTGTGGGGGATATTTTCTTGGCACACTTTGGGCCCATTAGTACCAACTGAGCATCGTGTCAACACCACAGCCTACCTGAGTATTTTTGCTGACCATGTCCATCCCTTTTTGACCACAGTGTACTCATTTTTTTAACCAATCTATGATTTATTCGAAACCCCCTTTGTCTCGTTTTTAG
Seq C2 exon
ATTCTGCTGTTGGATCATCCCAAGAAAATGATCAGAGACACACAGAGATACAAGCCATTCAGGCAGAAAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088619:ENSDART00000121769:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.360
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(19.2=100)
A:
NA
C2:
PF0092919=RNase_T=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]