HsaINT0139555 @ hg38
Intron Retention
Gene
ENSG00000148300 | REXO4
Description
REX4 homolog, 3'-5' exonuclease [Source:HGNC Symbol;Acc:HGNC:12820]
Coordinates
chr9:133408768-133411073:-
Coord C1 exon
chr9:133410985-133411073
Coord A exon
chr9:133408843-133410984
Coord C2 exon
chr9:133408768-133408842
Length
2142 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
ATTATATTTTATTTTTCTAGGTA
3' ss Score
10.03
Exon sequences
Seq C1 exon
GAGAAGAGCTTGAAGTTGTTCAGAAGGAAGTGGCAGAGATGCTGAAGGGCAGAATTCTAGTGGGGCACGCTCTGCATAATGACCTAAAG
Seq A exon
GTACTGGGCTCTCTCCTGGGGACTCAGCCTGCCCCTGCTCCGTGGGTGTTACACTCACGCCCTTGCTGTGTTGGGGAGTTTTAACAATGTGTGGGTTTGTGCTCTATGTTGGGAATACTTTGGTAATAATATCAGATACCGCGTGCTGAGTTCTTACTGTGTTTTAGGAGCCATGCCAGGCTCTTGTTTTGAGAGCCCCCAGCGAAACTGGGGTACCCATACCAGAGCAGCTGGCAACCCCGCCCTAATGAGAAATGAAGGTGCTGATACCCCTTTTACCTGGAGGAAGGCCTAATGTCCAGTTGTCCCATCCGTGACCAGGGTCCCTCCACAGGAAACAAGTTTATCCTGGCAGATGCCCTGTGGCCCATGTTCAGGTTACGCTTGCCTAACCATCACCCTGGCCCTGGGAGCTTGCCTTTGCCTTCTTTCTGGCGTCCCGAGGAAAATCCCGCCTGGGGCAGCCCCTGGTTCTTCAGATGGAAAGTGCAAATTCAGACACCACCACCGTGGGAAACAAGTTCAAAGACATATACAGACCCTGGGCAGGGAAGGCGTCATGGGTGGGGAGGGCAGCCTGCCATCTCCTGGTCACCCGAGGCAGGAATGAAGAGTCAGGCAGAGCGAGTACGTGTGTATTTACAGGAGAACAGGGTGGGGGTCACTTTGAGTTTATGGGCAAATGCCTGGATGTTGGTTTAAAGGACACAGTGGGAACAGCGGGGAGGCCAGTCTGCTAGATGGGAGAGACACTTAAGTTGTCACCTCTGCCCACCGGCTTGAAGCACTTGGGTGTGGTGAGGAACTTGAAGCCGTTCAGAAGGAAGTGACAGAGATGCTAATGTTCAGGCAGCAGCCTTTGCTATGGTGCTCCCGTGACGGCACTGTAGAGATCCCTTGAATCCATTGAAGATGCTGGAGGTGTTCATGCTTGTTTACAGAGGGTGAAACTGAGGTGAGAACCCCCCGGGCAGTGTCCTCACAGAAAGGTCTTCTGTGTGCTCCTGCTGTACCCCCTCAGAGACTGCTGCCGTGGGGACTCGTCCTTCCCTCCTGACTCTGACTCCATCCCTGGCACCTTGCGCAGCACATGTTCAAGTCTTTCTTGAAGATGATGCTAAGGACCAGACACAGTGGCTTATGCCTGTAATCGCAGCTTTTTGGGAGGCTGAGGCTGGAGGATTGCTTGAGGCCGGGAGTTAGAGACCAGCCTGAGTAACATAGGGGAGACCCCATCTCTATAAAAAATTTTAAAATTAGCCAGGTGTGGTGGCGTGTGCCTGTTGTCCCAGCTACTCAGGAGACTGGGGTAGGAGGATCAGTTGAGCCCAGGAGGTTAAGGCTGCAGTGAGCCATGATTACCCTATAGCACTGCAGCCCAGGTGACAGAGTGAGATCCTATCAAAAAACAAAACAAAACAAAAAATTGCATGCTAAGATTGCAAGATGAGCTGTTAAAATGTGTTATTTGCAACTTCCTGATGTGTAGAACCAACTCAAAATACAAGTATAATATAGGAATAAGTTGGTTGCTGGTTAACTGTTGACTGTTTTTCTCCTACTTCCTTGATTTCAAGATTTTGTTTTTATTGTCTCTGACTGTTGGGCATCAGCTTAAGTCAGTGCAATAAATTTCCTTCTGGAGTTGAAATTCATATCAGTGCCTTGTTTCCATGTGTGTGTGACACACTTGGATTCCCTACAAGATGTTACTTGCAGGGCAGCCGCGTTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCAAAACCCTGTCTCTACTAAAAAATACAAAAATTAGCCAGGCATGGTGGCGGGCACTTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAAACCTGGGGTCGGAGGTTGCAGTCAGCAAAGATTGAGCCACTGCATTCCAGCCTGGGTGACAGAGCAAGACTCCGTCACACACACACACACACACACACACACACACACACACACACACACACACACAAAGATGTTACTTGCAAAAGGTGGCGGGGGGAGGGGGTTCTGCTACTACAAACCAAAAATGAAAATGATTATCATTATATTTTATTTTTCTAG
Seq C2 exon
GTACTATTTCTTGATCATCCAAAAAAGAAGATTCGGGACACACAGAAATATAAACCTTTCAAGAGTCAAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148300:ENST00000371942:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=NA C2=0.387
Domain overlap (PFAM):
C1:
PF0092919=RNase_T=FE(25.4=100)
A:
NA
C2:
PF0092919=RNase_T=FE(21.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development