GgaINT0124001 @ galGal3
Intron Retention
Gene
ENSGALG00000001797 | GPSM1
Description
NA
Coordinates
chr17:8629627-8639875:-
Coord C1 exon
chr17:8639749-8639875
Coord A exon
chr17:8629698-8639748
Coord C2 exon
chr17:8629627-8629697
Length
10051 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GAGAGTGCGTTGTTTTGCAGGAG
3' ss Score
5.41
Exon sequences
Seq C1 exon
ATCGGGGACCGGACCGGAGAGCTGACGGCACAGGTGAACATGGCCCAGCTCAGGGCAGCCCTCGGCTTGGGCCCCGGTGATGAGGAGGTGGGCATGGCTCGTCCTTACTCTGGCTATGAGGCACAAG
Seq A exon
GTGAGCGCCTGGGCCACGTGAGGTGTGGGATGGTGCATGGGGAGCCGGGGATGTGTGCATGTGTGTGACATAAGGGGGAATATGAATAGCAGAAAAGAGACTGCGGTACGGAAGAGGAGAGTGAAGGGCATGTTGTTTCTCAGCAGAATCATTCATTATGACATATGGTGGTTGTGAAATCCTTGCTGTGACCAAGGCCCATGGGCAGCATCTTATTCCCCAGTCCTGCTCTGTGCTTGCCATAAGGACAGGGAAGGATCCACCTCAAAGAGTGCACAGAGTGAGCTAACGGAATTAATCTGCATTGGGAATGAACTTCCACACGCCAAGCAGCAAACCAGCTTTTGTCTCTTGTAGAGCTCTGCAGCGCCCTTTTAGCTGATGTGACTGATAGAACAAGCTTTCAGAAGGTGACTGGCAGGGATTTTTGGCTGCTGTCATCCTGATTAGCACCCAAGGAATCAGACTACAGCAGTAGCTGAAGGCAGGCTGTGAGCATTGGTATGCTGGGCGCTGCTCCCACCTGCGGGGATGCTGAAGCTGGAAGCTCCAAGGCTTGGTGATGGCACACAAAATGATTCTATTCACTGCTCTGGGCCGTCCTGCCCCTGCTGCCCGGTGTGGATGAGTCCTCACTGCCAGCCTGACACGTCCACAGCTTGGGGACCATCTGTCTGTCCTGCAGCTGCCGCCATAGGTGTCCGGGGGTGCCTGGCATGGAAGCTGGTTGTTCTGTAACTGTGGACAGGTTTATTAATTCAGACAGATGAAGTCGCATCCTGGGAGGCGCAGGCTGATTAAATATGACCTTGTTAGTGCAGATGCTTTCTGAGACTGTGTGTTCTTTTTCCTGGTGGGAGAGCTGGCTGAGGGAAGGTGATGGGATGCTGCCTGCAAGTGTTTGCTCTGTGTATTGATCTTGAAGGTGTAGCTGCTATGTCAGTGCTAAAGCTTTTCCTTGGAAATAGAGCTGGGAGGGAGGGAGCCAGTGTGCTCTGCCATCCTCCAGCAGAGCAAGGCTGGAGTCAGAGGTGGGGACAGCTGCATGCTCCAGCCCAGGTGAGCTTCAGGTTGGCTCCTGAGCAGTCTCTGCCTTTTGATGTCGTGGTGAGGAGAGCCTGCTTTTTCTTCTTCCCTTCACATTATTTTCACAGCTTAAGGATATAACATGACTGCATACTCATAAGGATGCTAAGTTGGCTGGGTAGGGCGGGCATGCTGTAAAGTGCACAAGTTCCATCAAACAGGTAGGGTGAAGTTTAAGAGCAAATCTCAGTTCTGGAGAAATCCGTGCAGCTGAGAAGCCCTGAGACAAACCATTGGGCTGCCACGTCCATCATGGGCTGCTTGCTTCCAAGCCTTGGGTCTGCCCTTCACTGGGGGTGTGTGTGGGGTGGGGGGGGGGGGGGGGAAGGAGTGTTTGGTGTTTTCCTCTGCTGTTCTGGCTCCTTTTGCTGAGCTCTTTGTGACTTAATTAATGTTCTGAGAGCAATCGGAGGTCAGAAGACAAAGCTGGAGGCTTTGGCTTGGAGGGAAGTGGGACAGTGCTACAAAAGTCTTGTGAAAGCATCGACCTTGTGGAGAAACACAAACAGGCAGAGCTTAAAGCAACAAGCAGAGAGAAGCCGTGGAGCAGCTAAAACATGAGGCAAACAAACGGGCTGTGTCTGCGTCTCCAAATGCCAAATACGTGGCCCTGAGAAGTGCTCTTGCCCTCTTTCACACACTGCAAGTAAAGAATTGAGTACTGATAGGATTTTGCTGTTGCCGAGAAGGGAACTTGCTGTGTCTGTGAGGGATTTGTGTTGGAGAGGCTGAGGTCAGTGTGAAGAGTGAGAAGTGCTGCCTGGTGCTGGGAGGTGCCCTTTGGAGTTGGCCGTCTGCTCTGCCCCATACACTGCTGCTCTGTAGGGCACGAGCTGTGCCCAGTGAACCCGGAGCACTCCACCCAACCCTTCCCTCGAGCATCCTGCTGGCAGTGCTACCAGGGCTAGCTCATATCCCCTGTGTGCATGGCACTGAGCACGACCTGGCAGAGTTCCTTGGCAGCTCCCTGCTCTGGAGGCTGGCGCCTGCTGGCTGCAGGGAGAGGACTTGCTGCTGCAGAAGGGGTGAGAGCAGCCCTGGCCAGGCAGTGAGTGCAGGAGGGTTCTCAGTGCTGCTGCGAAGGGAAAACCAACTCTGGACCATTTTTCCTCCACGCTCAGCAGTGTATCAGCATCAGCTGTCATCCGATGGCAGCAGCAGTGCTAGGAGACACTGAGCAACACCTCTGCTGGCAGCTGGTGTGGGTGGGAGGATGCGGGTGTTCCAGGAGGTGTTGGCATGTAGCTGCTTTCAGAGTTCCTGGCATGGCTTCTGTGCTGTATGCAGCTGCTGCTGCTGTCCGGCTGTGCTCGGTGAGCTCTGAGGGCAGGGAAGGGCCCAGCTGTGAGCCAGGCTTCCCCTGCTCTGCACATCCTCTGCTGAAAGAAAGGGTGGGCACAAGGCTGCTGTGCTGGGTTGCCCTTGGGTTTCAGGAGCCTCTGTGCTGGGCTCTGCTCATTCCTGCCTGACGAGCTTCAGGTGGTGTAGAGATGGCAGCCTGGGCAGGCACAGACCATCTCCTTCCTGGGCAGTGACCAATCTGTGTGGCTTTGAATGTGAGTCTTTTCATCCTCAGTGCAATTTTGAGCTGCTTCACAGGAATCTTTGAACCCTCAAATAAATTGGGATGGGGGAAAAAAAATCTGCTTTTATGTTTCCCCAGTCTGTTTGTTTGTTTGCTTGCTTGCTTTAAATATCTTTGAAGCATTTAAGAAGCATTTAGGGCTGCTGAGATGGGTTGGTCAGCCCAGCTTTGTGCTGATGCAGAGCAGGAAGGAGGCAGCGCTGCTCTCCTGTGCCTCAGGCTGGGATGCTGTGCCACAGCCTTCCCTCTATGTGCCTCAGCCCTGTTGTCAGGCACTGTGCGGGGGGGACAGCCAGCTGTGGCCCTCTGAGGCAGAATGCAGGGTGGCCTGGAAGGTGTTTTTCTGTGCTCAGACAGCTAGCTGCTCTGGGGAGCCTTAGCTAGTGAGTTCAGGTTTGTGCTCGGTCTGCTCCGGGGTGTGGATGCTCACTCCCACCAAGGCAGCTGCAGGAAGGTGGGCAGAGGGCTCTGAGTGCTGCAGTCATCCTCAGGGGGGGATGTTTAAGGGAGAAGGGACAACAGGAGTGCTGCCTGAACAGGGATGGGGGCTCTTAGATGGAGACTTAGGACATCTGAAGGATGCATTATCTTTGTGATGACTCTTTTCTAATTTCTCTGAGTAACCTCTGCTGTTGCAGCTGCTAAATCACTCCAGCAGCGCTGATGGGGGGTGATGAACCTCTGAGTCATTTGGAATCGAATCAGGTTATTTAGCACTCAACTCAGACCATCCCAGCATTAGCTTTGTGGGGTTTATAAAAAACCATTCTTCCCAAAGTCTGAGTAGTATTCAGTTCTCTCTTTTGCTTTGTACATGAGCCTCCTTCCCAGTGTCGGTGTTCAGTGCAGCTTTGGTGTTAAGTTCGGTGCTCAGACTTCTCAGCTCAGAGCAGAGGAAATGCTTCAGGGCTGGAGGAAAGGATGTTGTGCTAATGGAACTCAGGTGCTTGTTTCATCTTGGTGCCAGGGGAGGCAGGGAAGGAGGAGCAGGGAAGGAGCCTGTTCTTGAATCCTTTGGCAGAAGAGGCACAACGTGGCCTTTGGCAAAGCCATCCCTTAAATGAAGGGACCTCTTGTTGTGGGAGAGCGGCTTCATGGAAGTGGTCAGCTCAGTTCAGCAGCCCAGATGGGAGCTGGGAGCCTGACGTCCCCTCCGGCTGCTGCTCCAGCCCTGCTGTGCCTGCTTCCAGCAGCATGGTTCCCCAGGCAGTTCTCTTTGGTGGCCAGCACACAGGAAATAGCTATGGTTGTGAGAACTTTGTCCAACAGTGCAGTGCTACCTTTAGGATCAAGATACCCCTGTTTGGTTCTACTTGCAGCGTGGCAGGCAAGTCCTTCCTCACCCAACTGGAATTACTTCTCATCTTCAAAGGTCTTTGCATGCTTGCCTGTGGTCTGCTTTAGCACTTCACTGGGCAGAGCAAAGCCAGAGCCTCTGGCCCATCAGGCAGCAGAGCTTTGCTTAGCACAGAGACCTGGGAGCTTGTAGGGACCAACCAGAGCTCACACATGTAAATTCCTATGTGACCGAATGTGTCTCAGTAGATAGGAAGCACTGCAGGCTGGTGGCTGATGCACGACAGCAAACAGGAGGGAGGGATGAAGAATATTTCCCCCTTTTCTGTGGGATTTTGTGGCCTTTGATCACTGCATGTCTCCAGTGTGTATCATTCTTTCTCTTGCCCTGTCGGACACAGCTGCTGTAATTGGGCTTGTTTGGCTGCTGAAGGTGTTGCCTGTGTTAATTATTGCCTGTCACTTTCTAGCTCAGACTCGGTTCCTTTCTGATCTCTGCTCGTTCAATGTGAGCTGGTAAAGGAAGACCAGAGGTCATGAGGCTCTGCTACCTCCTGGCAGAGAAAGTCTTGCTCATAGAAGAAAACCAGGTGTTCTTGCCAAGCCTATCCTGGCTGGTCTTGAATTGGCCCCAAGGTTACGTGCCTCCTCCCAGCCTGCTCCACTGGGTTCAGTTTATCTGCCAGAAACTCCTCCTGTCCCCACAGTGCTTAATCCATGGAACCTTGCCTGGGGGAGGCCATGGTTACATGAGGCCACCTCTGGCACAGCTCCAAGCTTTCCGCAAGCTCCAAGGCTTGTATCTGACTCTGGTAGGTGCTGTGTTGTTAGGTGCACTGTGTATCCCCTCTCCTGCAAATACAAATGCAATGCGTTGTTATTTGGCCTGAATTGCCAATGCTTTCTTTGCAAAAAGCCACGTTCCAGCCTCACTCGGAGGATAAATGCCCACTGTGGATGGCTGTGAGGGGGGAACTGGGCTGGGAGACGTGATCAAGGTGACAGCAATCAGTAAGGGTTTGTAAGGCTGTGAGCTGTAGGATCACCTTATACTTGGAGCCTGCAGCTTTCCTGAGCTATGCTGGCTGTGCCCACCCCGACTGTGCTCTGTGGAGCTCCTGGGTGCCACATAGACGTGCAGTGCTGCTGCCATGCAGGGCTTCAGCTGTCAGATGGGATCCTGGAAGATGTAAGATTTGGGTGCCACGTACATAAAATGTCTTCTGCCAGATCAGGGGGGTGAGCATCCTGATTCAAAAGTAACTTCTTGTTAGTGCCTATTGTGTGTACATATGCATTTTTATGATGGAACCGTTTCCCCTTGGGGGAGGGGGGAGGAAGGGGGAAGCCACTGTAATGCTGTTATTCTGGAGGAGGTTTTTGTAGTGCTCAGGATCTTGTCTGGAGGGTTGCTATTTGCTCAGCTGTGTGCTGGTCTGTGTGCCAATGAATACAGCGCTGCAGAGCAAACACCGGAGCCCAATCTTCCCAGCAGAAGAGGTTTTGTTCCCGTCCTTTGGCTTCCAGCTTTGCTATGGAGGGCTGAGAATGCAGGACCTTGCGTGGGTCCAAAGCATTTCTGAGGAAGTCTAATGTGACAACGTGCTGGAAGTGATCTTCCTGCTGCTCTCCCTTAGCTGTGGGTTGGCTTTGTCCTTTATCTGTCCTTTCTCTTGCAAGCCGTACGTGTTCATGGTTTTGTCTGAACCACGGAGCCCTCGTGTAGCTGGTAGGGAGAGAAGGGCTGTTTTAGCCATCCCACCGTGTCTTCAGCCTTAGAAGAGGCCAGAAACGTTGGGATTTTCCTGGTCCTTTCCAATCCAGAAGGTGGGCTGATGAGCAGATGCTCCTTCCCATAGATGGGCACACAAAAGCTCAGTGCCAGCATTTTATGGCTCAGTCATCGTAAATAACTGATACTATTTGCTTTCTCTATTTAGAGGAAAGCATTGTTCTATCCCAATAACATCAACTGGGAAAACAAATGCCAGCATTTATCATGCAAGTGCTGGCACTAATAGAGGTCAAGTGGATTTATAGTACCAGAACCCATTATGTGTTTGAAGACTAATTAAAGCCCTAAATGAGATGCCTGTTCTGCTGGATGCTTTTTTAATTTTTTTCCTTGCTGCTGTGGTTTTTTTTCCTCCTCTTTCCTCTCTGAAGAGCACTGGCTGTAATAATGGAGCACTGGCTGGAATAGGAGATGTCCAGATTAGATGTCAGCAGTGTAAGATTTGAGATGCTCTGTGCTCACTGAGATTGCTGGATTGTATCTCTGCAGTTGTGGCTGGGGTTTACTGAGCTGCCTTTCTCCCCAGCCGACTGCTTGGCTGCTCTAATTGAATCAGATTTAACAGTATTTGGAGCTGTCTGCCAGAACCAGGGATCTGCAATGCCGGGCTCTGTGCAAATGTGGGAGGGCAACGTTCTGGGCTAGAAGAATGTGCCTGAAGGACAAGTTGGTATCTCAGTTGATTTGAGTGTAGAGAGAAATGACCTTTTCGAGTGCTTATGCTGAGATTTGTGCTCTGTGGGGTAACTGCTGCCCCTGAGATGCCATGGGGTCACATCCCTGAGCTGCTGTGTGCTGCTCAGCTGGGAGAGCCAGAGGGAGGGGGGAGCAGTGCTGGCCATTTAACCTTTCCCCAGCAGTCTTCTGTGGAGTTCACTGTCAGCTTTAATTCAGGTACAGCCATCCAGAGGGAGACAGAGTGTTCCAGGCCTGCAAACTGAACTGTCGGTCTCTCTGTGCTTGGGAGCTTGCTTTGTCTATGGAGGAGGCATCTCTCCAGGCTGGAGAGGGGGGAGAGCCTAGGAGTCCTCAAAGCACATGTCAACTTGATGAGAGCTCCTGGCAGGGCTCCCCGAGCTGCTGCTACACATGTTGTGCTCCATCTTGTCAAGGCTGAGATCTCGAGTGCCAGCAGGATACGGGGACTGCCCATGCAGGAACAGAACTGCCCCCTCTTTCTGCCCAGTTTTACACTACTGCAAATCTGAGTGGGGTAATCCATGGCTGTTCTGCGATTAAAAACGCTTCCTTGAGTTCTCTGTGGCTACATCCTGCATGGTAGCAAGGTACTGGGAGAGAATTCATGCTGTGTGAGTGTCTCCTTGGGAGGAACCCAGCTGGTCCTCCCAGTGCCTCACTGCCCCATGGGGACTGGAACCCCATGCAGTGCTGTGCTGAGCAGGTCCTGTCAGAGGCTTTTGCAGAAGAGGCTGATGTGATCTTTTCTTTAAGTGTGATGGTGAAGCCTCAGAAGTCCTGACAAACAGAGCTGCCCTACACCATTCAGCTTGAACAGCACAAGGACAGCAAGGGCTGTGCACTGCCCAACTTCTGGCTATGAGGAATGATTGGAAATAAAGCATGCTGTGTCTGTGCCATCACAGGTAGCACGAGGGTGGGGGTCTCTGCATCTCTGCAGAGCATGGATGTGAGAAAGAAGTGTCTGGAGGTGAAGAAATTGGGTTAGTGGCCCTAAGACAGGAAAGTAGGGAGTAGCAGTGAGATGAGGGATGTGAGGGAGCCGGGAGAAGCAAGGATGGCTCCGTTACATCCCTTCGCTCTCTTTCAGTCAACTTCTCCCAGGGTCCATTGCTCCCTCCCAGGTGGGGAAGGGCTGCTTCCAGTTTTAAAACAGAGGAATGTGGAAACCGTTGGACACCCCAGGAACCAAACTGCAGGAGCAAAAAACAAACGTTGAGGAAAAGAAACCCGACCTCTTTACTGGAGAGTTGGGATCACAGGAGGTGGGGGGGGGGGGGGGGGGGGAGTTTAAAAAGCAACAACACCCCCTGAGTGCTGAGAAGGGCAACATCTGAGGAGCTGCAGGAAAACAAGCCATGAATGCAGGCAGTCAGCAGCTGTGCTCAGCTGATGTTCACAAGAAGGTTTCAGCTCGCTCTTATTAGAGACCTCAGCAAACCTTAAAGACAGAGCGAGCATTTAGAAATGCCCCTGAGGTTTTCGGTTACTGTGCAGTTGGCTTGGTAAACATGCCAATAAATACTGGAGGGAGAAGAGAAAAGCTTACAGAGGAACAGACACGGGTTTTCAGCTGCTCAGTCTGCTGCGTCCACCGCTGTCGGTTGGTGCTGGGGAGGAGGAGGCGGACGGGGATGCCTGGATGGCATTGGGGCTGTGGGTACTGCTGGGAGAAGGGACTTTGGAGGAGGTTGGGGCAGCACACGCCATCTGGAGCTGTCTGGGGGACCGTCCTGCCTGGGGACGGAGAGCTGATGGGACCGCTTCCATTGCGGTGCGCTTGTGAGTATGGGGCTCTCTCTGCTCTGCTGGAAGATGGGTGTGCGTGGGCTCTGGAGTGATGGGGGGGGAATGGAACTGGGTGTGTTTGGGGCCCCTCTTGGCCTTGTGGCTGGTTTTGTTTTGTTCTGGAAGCAGATAGCTGAGTTGGGATGCTTGGAGTTGGGTTTGTAGTTCCTCTCTTGGCTCAGCTGAATGTGAGGTCTGTGCTGTAGCTGAGGAACATCAGCACCCAAACAACTGGAAAAGGTGAATTGTTCTGTGTGCCCTAATTGCTGGGGCAATCTGAGTACGTATATTTAATTAACAAAGGAGGAAGGCAGGTTTTCTCAGATCAGAGATTGATGGTTTCTGGCCAATGGTTTAATGCTATTGTGAATGTACCAAAGCACCTGAGGACAGGGGTGTATAATTAACAGCTCTTCAGGCCATTAGAAGTGACACGTGTTTATCCAATCAGGCACACGCTGCCTCTCCAGGGCTCTCCTGGAAGCAGTCATTAGGAGCTGCTGTGACGCACGCTGGCTTCCAGGTGCCCACCTCACCTCTTGGGCATCACCATCAGACCTACGTGTGCCATCTGGCTTAGCTTACTTTGCTCTCCTGGCAACGTGGGAGGAGACCCCTCCGTCCTGCTGGTGCCCATGGGTGAGGGGGGGGTGTTGTGCATCCCACCGGGGACCTCAGCTTTAGCAAAGATGTGGTAGCTTAGTTAACATAAGCCAAGGGCTGAAATAGAAATGGTAAGGTAGTGAGCTTTGTGTTCTTCACCGAGGGCAGGCGAGGCTGTGGGATAAGCAGTGGTGCTGTTTAGACACTGGTGGGAAACCGAGGGACCCTTGGGCTCAATGAGTTTGCTGTTGCAGGAACTGCTCGCAGCTCGGTGGTTTCCGTTCTCAGGGCTCTGCACGAGGATGGCTTTGAGCTCACATGCTCTCCTCACCCTCGTCCAGGACATCCCCCTGAGCTTTGGACTTGAGGTCCCATGACAACAACTGCCATGTTTCTCTTTCTGCTGTTCTCGGTGTTGCTGATGTGGGGCGTCGCATGGCTCTCAGCTACATCAAACTGTCAGCAAAGACCAGGGATGTGGAGCAGAAGGCAGGAAGGGCAGAAGCTTTCCCAGCTGTGTTAAAGGCATCCCAGGGCTGCTCGCTTTGTGCTGGTAGTGAGGGGAGGGCAGCTGGAGGGAGACTTGCAGCTAATGGGAGTCTGAAGAACAGAGGTCTGGTTTGAAGCCCCTCTGTTATCATTAGGGTATTGCATTTGAGTTAATTGTATGAAATATCATGTATCACAAAATGCTTTCAAATTTAACGACTTGTCAAGGGGAAGTTTCCATCTTCTTGATGCTAGGCCCATGAAAGTGTGCTCTTTCACTCAGTTTTCCAGCCCTTGTGACTGTAGAGAAAGGCTATGAGCTGCGTCCCAGACGCATTCTTAAAGCTAAAAACATGAAGATAAAGCAACAATCCCACGCGTTGTGTTTTTGTTATGACTTCTCTCAGTGCCAGCCTCCTGACTTCTCATGCTTGAGGTGGGGGCTGTAGCTCTGGGATTGCAGAGCTGAGACCCACGGCCACAGTGCGGCCCCACTGCTGGTTTGTGCAGCTCTGGCTGTTGCTGACTGTGCTGTGATGGCGCTTTGAAAAAGATTCAAAACAACAGAGAGAAAACACATCTGAATCTCAAGGACAGTGTGCAGCTGCAGCATCCCATCCGTCCGACTTTGCAGCAATGGGAGCTGAGGGGCTGCCCTGCTTCGAACCTATCTGTGACACCTCCTGATGTGAGAGTGCGTTGTTTTGCAG
Seq C2 exon
GAGCCAGGCCCAAGAGAGTCCAAAGAAACAGCATGGACAGCTTAGACCTCCTCAAGTTCCCTTCTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001797:ENSGALT00000002770:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=NA C2=0.958
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(39.7=53.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]